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Status
Public on Mar 10, 2010
Title
Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SurePrint G3 Human CGH Microarray 4x180K
Submission date
Mar 02, 2010
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (1333)
GSM536304 , GSM536305 , GSM536306 , GSM536307 , GSM536308 , GSM536309
GSM536310 ,
GSM536311 ,
GSM536312 ,
GSM536313 ,
GSM536314 ,
GSM536315 ,
GSM536316 ,
GSM536317 ,
GSM536318 ,
GSM536319 ,
GSM536320 ,
GSM536321 ,
GSM536322 ,
GSM536323 ,
GSM536324 ,
GSM536325 ,
GSM536326 ,
GSM536327 ,
GSM536328 ,
GSM536329 ,
GSM536330 ,
GSM536331 ,
GSM536332 ,
GSM536333 ,
GSM536334 ,
GSM536335 ,
GSM536336 ,
GSM568877 ,
GSM568878 ,
GSM577164 ,
GSM577165 ,
GSM577166 ,
GSM577167 ,
GSM577168 ,
GSM577169 ,
GSM577170 ,
GSM577171 ,
GSM577172 ,
GSM577173 ,
GSM577174 ,
GSM577175 ,
GSM577176 ,
GSM577177 ,
GSM577178 ,
GSM577179 ,
GSM577180 ,
GSM577181 ,
GSM577182 ,
GSM577183 ,
GSM577184 ,
GSM577185 ,
GSM577186 ,
GSM577187 ,
GSM577188 ,
GSM577189 ,
GSM577190 ,
GSM577191 ,
GSM577192 ,
GSM577193 ,
GSM577194 ,
GSM577195 ,
GSM577196 ,
GSM577197 ,
GSM577198 ,
GSM577199 ,
GSM577200 ,
GSM577201 ,
GSM577202 ,
GSM577203 ,
GSM577204 ,
GSM577205 ,
GSM577206 ,
GSM606475 ,
GSM606477 ,
GSM606490 ,
GSM606504 ,
GSM606510 ,
GSM606511 ,
GSM606514 ,
GSM606516 ,
GSM606527 ,
GSM606529 ,
GSM606540 ,
GSM606543 ,
GSM606545 ,
GSM606550 ,
GSM606553 ,
GSM606586 ,
GSM620918 ,
GSM620919 ,
GSM620920 ,
GSM620921 ,
GSM620922 ,
GSM620923 ,
GSM620924 ,
GSM620925 ,
GSM620926 ,
GSM620927 ,
GSM620928 ,
GSM620929 ,
GSM620930 ,
GSM620931 ,
GSM620932 ,
GSM620933 ,
GSM620934 ,
GSM624007 ,
GSM657844 ,
GSM657845 ,
GSM685387 ,
GSM685388 ,
GSM685389 ,
GSM685390 ,
GSM685391 ,
GSM685392 ,
GSM685393 ,
GSM685394 ,
GSM685395 ,
GSM685396 ,
GSM685397 ,
GSM685398 ,
GSM685399 ,
GSM703156 ,
GSM703157 ,
GSM703158 ,
GSM820725 ,
GSM821647 ,
GSM849618 ,
GSM849619 ,
GSM849620 ,
GSM849621 ,
GSM849646 ,
GSM849647 ,
GSM849648 ,
GSM849688 ,
GSM849689 ,
GSM869119 ,
GSM869120 ,
GSM869121 ,
GSM869122 ,
GSM869123 ,
GSM869124 ,
GSM869125 ,
GSM869126 ,
GSM869127 ,
GSM869128 ,
GSM869129 ,
GSM869130 ,
GSM869131 ,
GSM869132 ,
GSM869133 ,
GSM869134 ,
GSM869135 ,
GSM869136 ,
GSM869137 ,
GSM869138 ,
GSM869139 ,
GSM869140 ,
GSM869141 ,
GSM869142 ,
GSM869143 ,
GSM869144 ,
GSM869145 ,
GSM869146 ,
GSM869147 ,
GSM869148 ,
GSM869149 ,
GSM869150 ,
GSM869151 ,
GSM869152 ,
GSM869153 ,
GSM869154 ,
GSM869155 ,
GSM869156 ,
GSM869157 ,
GSM869158 ,
GSM869159 ,
GSM869160 ,
GSM869161 ,
GSM869162 ,
GSM869163 ,
GSM869164 ,
GSM869165 ,
GSM869166 ,
GSM869167 ,
GSM869168 ,
GSM869169 ,
GSM869170 ,
GSM869171 ,
GSM869172 ,
GSM869173 ,
GSM869174 ,
GSM869175 ,
GSM869176 ,
GSM869177 ,
GSM869178 ,
GSM869179 ,
GSM869180 ,
GSM869181 ,
GSM869182 ,
GSM869183 ,
GSM869184 ,
GSM869185 ,
GSM869186 ,
GSM869187 ,
GSM869188 ,
GSM869189 ,
GSM869190 ,
GSM869191 ,
GSM869192 ,
GSM869193 ,
GSM869194 ,
GSM869195 ,
GSM869196 ,
GSM869197 ,
GSM869198 ,
GSM869199 ,
GSM869200 ,
GSM869201 ,
GSM869202 ,
GSM937060 ,
GSM937061 ,
GSM937062 ,
GSM937063 ,
GSM937064 ,
GSM937065 ,
GSM937066 ,
GSM937067 ,
GSM937068 ,
GSM937069 ,
GSM937070 ,
GSM937071 ,
GSM937072 ,
GSM937073 ,
GSM976998 ,
GSM976999 ,
GSM977000 ,
GSM977001 ,
GSM977002 ,
GSM977003 ,
GSM977004 ,
GSM977005 ,
GSM977006 ,
GSM977007 ,
GSM977008 ,
GSM977009 ,
GSM977010 ,
GSM977011 ,
GSM977012 ,
GSM977013 ,
GSM977014 ,
GSM977015 ,
GSM977016 ,
GSM977017 ,
GSM977018 ,
GSM977019 ,
GSM977020 ,
GSM977021 ,
GSM977022 ,
GSM991045 ,
GSM1010234 ,
GSM1010235 ,
GSM1010236 ,
GSM1010237 ,
GSM1010238 ,
GSM1010239 ,
GSM1024617 ,
GSM1024618 ,
GSM1024619 ,
GSM1024620 ,
GSM1024621 ,
GSM1024622 ,
GSM1024623 ,
GSM1024624 ,
GSM1024625 ,
GSM1024626 ,
GSM1024627 ,
GSM1024628 ,
GSM1024629 ,
GSM1024630 ,
GSM1024631 ,
GSM1024632 ,
GSM1024633 ,
GSM1024635 ,
GSM1024636 ,
GSM1024637 ,
GSM1024638 ,
GSM1024639 ,
GSM1024640 ,
GSM1024642 ,
GSM1024645 ,
GSM1024648 ,
GSM1024650 ,
GSM1024653 ,
GSM1024656 ,
GSM1024659 ,
GSM1024662 ,
GSM1024665 ,
GSM1024667 ,
GSM1024670 ,
GSM1024671 ,
GSM1024672 ,
GSM1024673 ,
GSM1024674 ,
GSM1024675 ,
GSM1024676 ,
GSM1024677 ,
GSM1024678 ,
GSM1024679 ,
GSM1024680 ,
GSM1024681 ,
GSM1024682 ,
GSM1024683 ,
GSM1054411 ,
GSM1071622 ,
GSM1071623 ,
GSM1071624 ,
GSM1071625 ,
GSM1081722 ,
GSM1081723 ,
GSM1081724 ,
GSM1081725 ,
GSM1081726 ,
GSM1081727 ,
GSM1081728 ,
GSM1081729 ,
GSM1151282 ,
GSM1204982 ,
GSM1204983 ,
GSM1204984 ,
GSM1204985 ,
GSM1232130 ,
GSM1232131 ,
GSM1232132 ,
GSM1232133 ,
GSM1232134 ,
GSM1232135 ,
GSM1232136 ,
GSM1232137 ,
GSM1232138 ,
GSM1232139 ,
GSM1232140 ,
GSM1232141 ,
GSM1232142 ,
GSM1232143 ,
GSM1232144 ,
GSM1232145 ,
GSM1232146 ,
GSM1232147 ,
GSM1232148 ,
GSM1232149 ,
GSM1232150 ,
GSM1232151 ,
GSM1232152 ,
GSM1232153 ,
GSM1232154 ,
GSM1232155 ,
GSM1232156 ,
GSM1281608 ,
GSM1281609 ,
GSM1281610 ,
GSM1281611 ,
GSM1309342 ,
GSM1309343 ,
GSM1309344 ,
GSM1309345 ,
GSM1309346 ,
GSM1309347 ,
GSM1309348 ,
GSM1309349 ,
GSM1309350 ,
GSM1309351 ,
GSM1309352 ,
GSM1309353 ,
GSM1309354 ,
GSM1309355 ,
GSM1309356 ,
GSM1309357 ,
GSM1309358 ,
GSM1309359 ,
GSM1309360 ,
GSM1309361 ,
GSM1309362 ,
GSM1309363 ,
GSM1309364 ,
GSM1309365 ,
GSM1309366 ,
GSM1309367 ,
GSM1309368 ,
GSM1309369 ,
GSM1309370 ,
GSM1309371 ,
GSM1309372 ,
GSM1309373 ,
GSM1309374 ,
GSM1309375 ,
GSM1309376 ,
GSM1309377 ,
GSM1309378 ,
GSM1309379 ,
GSM1309380 ,
GSM1309381 ,
GSM1309382 ,
GSM1309383 ,
GSM1309384 ,
GSM1309385 ,
GSM1309386 ,
GSM1309387 ,
GSM1309388 ,
GSM1309389 ,
GSM1309390 ,
GSM1309391 ,
GSM1309392 ,
GSM1309393 ,
GSM1309394 ,
GSM1309395 ,
GSM1309396 ,
GSM1309397 ,
GSM1309398 ,
GSM1309399 ,
GSM1309400 ,
GSM1309401 ,
GSM1309402 ,
GSM1309405 ,
GSM1309406 ,
GSM1309407 ,
GSM1309408 ,
GSM1309409 ,
GSM1309410 ,
GSM1309411 ,
GSM1309412 ,
GSM1309413 ,
GSM1309414 ,
GSM1309415 ,
GSM1309416 ,
GSM1327943 ,
GSM1327946 ,
GSM1327950 ,
GSM1327957 ,
GSM1327964 ,
GSM1327970 ,
GSM1333853 ,
GSM1333854 ,
GSM1333855 ,
GSM1333856 ,
GSM1333857 ,
GSM1333858 ,
GSM1333859 ,
GSM1333860 ,
GSM1333861 ,
GSM1333862 ,
GSM1333863 ,
GSM1333864 ,
GSM1333865 ,
GSM1333866 ,
GSM1333867 ,
GSM1333868 ,
GSM1333869 ,
GSM1333870 ,
GSM1333871 ,
GSM1333872 ,
GSM1333873 ,
GSM1333874 ,
GSM1333875 ,
GSM1333876 ,
GSM1333877 ,
GSM1333878 ,
GSM1333879 ,
GSM1333880 ,
GSM1333881 ,
GSM1333882 ,
GSM1333883 ,
GSM1333884 ,
GSM1333885 ,
GSM1333886 ,
GSM1334479 ,
GSM1334480 ,
GSM1334481 ,
GSM1334482 ,
GSM1334483 ,
GSM1334484 ,
GSM1347258 ,
GSM1347259 ,
GSM1347260 ,
GSM1347261 ,
GSM1347262 ,
GSM1347263 ,
GSM1347264 ,
GSM1347265 ,
GSM1347266 ,
GSM1347267 ,
GSM1347268 ,
GSM1347269 ,
GSM1347270 ,
GSM1347271 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (88)
GSE21468 Array CGH-based Characterization of Genetic Alterations in Pulmonary Neuroendocrine Tumors
GSE23065 Multiple chromosomal monosomies are characteristic of giant cell ependymoma
GSE23540 Copy number aberrations of genes regulating normal thymus development in thymic epithelial tumors
GSE24602 Comprehensive array CGH of normal karyotype Myelodysplastic syndrome reveals hidden recurrent and individual genomic copy number aberrations with prognostic relevance
GSE25228 Chromosomal abnormalities in colorectal cancer
GSE25229 Genome-wide analysis of unbalanced chromosomal changes in colorectal carcinoma
GSE25411 Molecular Cytogenetic Analysis of a Gliosarcoma with Osseous Metaplasia
GSE26715 miR-1245 induce genomic instability
GSE27671 Genomic Aberrations in Paediatric Gliomas and Embryonal Tumours
GSE28450 aCGH analysis of familial Alzheimer’s disease with presenilin 2 mutation patient-specific induced pluripotent stem cells
GSE32414 Hypoxia-induced stem-like cancer cells resistance to VEGFR inhibition
GSE34484 LNGFR- and Thy-1-based prospective isolation of human mesenchymal stem cells reveals functionally distinct subpopulations.
GSE35476 Array CGH analysis of human colorectal tumors
GSE35534 Genome-wide copy number aberrations and methylation profiles in human colorectal lesions
GSE38229 aCGH was used to identify the overall genomic imbalances of SCC of the vulva in 14 patients
GSE38230 SCC of the vulva
GSE39663 Copy Number Data from Archival Leiomyosarcoma
GSE40299 Deep Clonal Profiling of Formalin-Fixed Paraffin-Embedded Clinical Samples
GSE41188 High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development (aCGH)
GSE41193 High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development
GSE41813 Colorectal tumor DNA vs. normal control DNA
GSE42984 Variant acute promyelocytic leukemia (APL) bone marrow aCGH
GSE43810 Phenotypic and genotypic stability in a preclinical model of renal cell carcinoma
GSE44275 Analysis of whole-genome copy-number variation in Crohn's disease fistula tissue
GSE47506 Recurrent 11q aberrations in MYC-neg mature aggressive B-cell lymphomas resembling BL
GSE47508 A recurrent 11q aberration pattern characterizes a subset of MYC-negative mature aggressive B-cell lymphomas resembling Burkitt lymphoma
GSE49693 Replication timing of siRNA control and siRNA PolQRKO cells
GSE50897 Bioinformatic evaluation and comparison of parallel aSNP and aCGH analyses of myelodysplastic syndromes patients with normal karyotype
GSE53070 Replication timing of control and overexpressed PolQ fibroblast cells
GSE54183 Metastatic potential is determined early in synovial sarcoma development and reflected by tumor molecular features [aCGH]
GSE54185 Intratumoral heterogeneity of prostate cancers
GSE54188 Metastatic potential is determined early in synovial sarcoma development and reflected by tumor molecular features
GSE55016 Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer
GSE55150 Desmoplastic Melanoma
GSE55345 Generation 2.5 Antisense Oligonucleotides Targeting the Androgen Receptor and its Splice Variants Suppress Enzalutamide-Resistant Prostate Cancer Cell Growth
GSE55852 GTF2I Mutations are Common in Thymic Epithelial Tumors
GSE55989 ZEB1 expression prevents DNA replication stress in cancer stem cells and delays chromosomal instability [Agilent]
GSE56031 ZEB1 expression prevents DNA replication stress in cancer stem cells and delays chromosomal instability
GSE57176 Early and advanced gastric cancer genomes
GSE58512 Intratumoral heterogeneity of colorectal cancers with distant metastases
GSE59902 DNA methylation study in breast cancer [aCGH]
GSE59903 DNA methylation study in breast cancer
GSE60067 Cervical neoplasia genomes
GSE64597 WDLPS and DDLPS aCGH case 73
GSE65304 Comprehensive genomic analysis of relapse neuroblastoma [arrayCGH]
GSE65307 Comprehensive genomic analysis of relapse neuroblastoma
GSE65720 Clonal relationship of relapsing diffuse large B-cell lymphoma
GSE67131 NPM‐ALK permits the survival of thymic T cells with aberrant T cell receptor rearrangements enabling thymic escape and tumor development
GSE67487 Genomic characterization of mesothelioma patients by CGH arrays.
GSE67841 Spitz tumors and melanomas with MET fusion
GSE69083 Replication timing of control and siRNA PR-set7 cells
GSE69084 Replication timing of control and suv4-20h (KO and inducible mutant) cells
GSE69085 Degree of H4-K20me defines distinct subsets of replication origins in active and silent chromatin domains of mammalian cells
GSE73199 Simultaneous amplification and mutation of KRAS: a therapeutic target in a rare subgroup of glioblastoma?
GSE73979 3 cases of renal cell carcinomas with TFEB amplification
GSE77392 SAMHD1 degrades nascent DNA at stalled Forks to promote replication restart
GSE80029 Replication timing program in 6 human model cell lines
GSE81625 NTRK3 kinase fusions in melanocytic tumors
GSE85295 Intra-individual genomic heterogeneity of ovarian serous adenocarcinoma [Agilent]
GSE85296 Intra-individual tumoral heterogeneity of ovarian serous adenocarcinomas
GSE89982 Amplification of KRAS in a low grade glioma
GSE90778 Array-CGH data of aneuploid tumor populations of different urothelial cancer sites in one patient
GSE96039 Ovarian tumors associated with Yo-PCD
GSE96905 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [Agilent022060]
GSE96909 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans
GSE101447 Intratumor heterogeneity in metastic endometrial carcinoma
GSE102974 SHED: control vs Hepatocyte-like cells
GSE103665 Copy number alteration burden is a pan-cancer prognostic factor associated with metastasis and death in conservatively treated prostate cancer: TAPG1 CNA cohort aCGH data
GSE106773 ArrayCGH on a cohort of pediatric T-ALL cases characterized by TCRAD-MYC translocation
GSE110785 Whole genome copy number profiles of FFPE samples from patients with metasatic colorectal cancer (mCRC)
GSE111298 aCGH data from SCEC and corresponding normal samples
GSE111299 Genome-wide analysis of gene expression and DNA copy number variations in small cell esophageal carcinoma
GSE118910 Analysis of copy number variation (CNV) in human induced hepatic progenitor cells (hiHepPCs) by aCGH
GSE131200 Detection of tetraploidization in chromophobe renal cell carcinoma: insights and pitfalls [Agilent CGH]
GSE138404 Array CGH analysis of human uveal melanomas
GSE138665 Single-cell RNA-seq reveals intratumoral heterogeneity in primary uveal melanomas
GSE141122 New, easy, quick and efficient DNA replication timing analysis by high-throughput approaches
GSE145340 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-022060)
GSE145341 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis
GSE153228 Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma [Agilent]
GSE153230 Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma
GSE156076 The genomic landscape of colitis-associated colorectal carcinomas is dominated by TP53 mutations, aneuploidy and gains of chromosome arm 5p
GSE156618 Replication timing data for six human cell lines under aphidicolin treatment (t0) and after release (N+1)
GSE178927 DNA polymerase zeta contributes to heterochromatin replication to prevent genome instability
GSE180530 Palbociclib interferes with origin firing in a pRb independent manner
GSE180865 GNL3/nucleostemin links DNA replication homeostasis and replication forks stability
GSE248981 DBF4, not DRF1, is the crucial regulator of CDC7 kinase at replication forks.
GSE254936 Proteogenomic analysis reveals adaptive strategies to alleviate the consequences of aneuploidy in cancer
Relations Alternative to
GPL10150
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 36)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION 1
532
340
HsCGHBrightCorner
pos
2
532
338
DarkCorner2
pos
3
532
336
DarkCorner2
pos
4
532
334
DarkCorner2
pos
5
532
332
DarkCorner2
pos
6
532
330
DarkCorner2
pos
7
532
328
DarkCorner2
pos
8
532
326
DarkCorner2
pos
9
532
324
DarkCorner2
pos
10
532
322
DarkCorner2
pos
11
532
320
DarkCorner2
pos
12
532
318
DarkCorner2
pos
13
532
316
DarkCorner2
pos
14
532
314
DarkCorner2
pos
15
532
312
DarkCorner2
pos
16
532
310
DarkCorner2
pos
17
532
308
DarkCorner2
pos
18
532
306
DarkCorner2
pos
19
532
304
DarkCorner2
pos
20
532
302
DarkCorner2
pos
180880 33868 Kbytes .Supplementary data files not provided
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