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| Status |
Public on May 24, 2010 |
| Title |
Virus 45K Microarray - Agilent 25161471 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Viruses |
| Manufacturer |
Agilent |
| Manufacture protocol |
see manufacturer's website
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| Submission date |
Apr 12, 2010 |
| Last update date |
May 24, 2010 |
| Contact name |
Omar Jabado |
| Organization name |
Columbia University
|
| Department |
Epidemiology
|
| Lab |
Lipkin
|
| Street address |
722 W 168 Street 17th Fl
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10032 |
| Country |
USA |
| |
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| Samples (29)
|
GSM532755, GSM532756, GSM532757, GSM532758, GSM532759, GSM532760
GSM532761, GSM532762, GSM532763, GSM532764, GSM532765, GSM532766, GSM532767, GSM532768, GSM532769, GSM532770, GSM532771, GSM532772, GSM532773, GSM532774, GSM532775, GSM532776, GSM532777, GSM532778, GSM532779, GSM532780, GSM532781, GSM532782, GSM532783
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| Series (2) |
|
| Data table header descriptions |
| ID |
|
| Row |
Spot row |
| Col |
Spot column |
| Probe ID |
|
| Probe Class |
Probe type |
| Probe SubClass |
Probe Subtype |
| Target Accession |
|
| GB_ACC |
Genbank accession |
| SPOT_ID |
|
| Virus Start |
Probe start position |
| Virus End |
Probe end position |
| Strand |
Orientation of the probe sequence (plus strand or minus strand) |
| Matches |
Count of matches |
| Homology String |
Base-by-base similarity of probe to virus sequence (1 = match / 0 = mismatch) |
| Gibbs Free Energy |
Gibbs free energy of probe-template hybrid |
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
Row |
Col |
Probe ID |
Probe Class |
Probe SubClass |
Target Accession |
GB_ACC |
SPOT_ID |
Virus Start |
Virus End |
Strand |
Matches |
Homology String |
Gibbs Free Energy |
SEQUENCE |
| 1 |
1 |
1 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
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|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 2 |
1 |
2 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 3 |
1 |
3 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 4 |
1 |
4 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 5 |
1 |
5 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 6 |
1 |
6 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 7 |
1 |
7 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 8 |
1 |
8 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 9 |
1 |
9 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 10 |
1 |
10 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 11 |
1 |
11 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 12 |
1 |
12 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 13 |
1 |
13 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 14 |
1 |
14 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 15 |
1 |
15 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 16 |
1 |
16 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 17 |
1 |
17 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 18 |
1 |
18 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 19 |
1 |
19 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
|
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
| 20 |
1 |
20 |
Pro25G_onG3PDH570_10Ts |
Agilent Control |
|
|
|
--Agilent Control |
|
|
|
|
|
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ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT |
Total number of rows: 45220
Table truncated, full table size 8493 Kbytes.
| Supplementary data files not provided |
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