GEO help: Mouse over screen elements for information.
Status
Public on May 20, 2010
Title
Agilent-027414 SurePrint G3 Mouse CGH Microarray 1x1M
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Mus musculus Manufacturer
Agilent Technologies
Manufacture protocol
See manufacturer's web site at http://www.agilent.com/ .
Description
Arrays of this design have barcodes that begin with 16027414 or 2527414.
Submission date
May 20, 2010
Last update date
May 20, 2010
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (422)
GSM876617 , GSM876618 , GSM876619 , GSM876620 , GSM876621 , GSM1115036
GSM1115037 ,
GSM1115038 ,
GSM1207783 ,
GSM1207784 ,
GSM1207785 ,
GSM1334665 ,
GSM1519647 ,
GSM1519648 ,
GSM1519649 ,
GSM1519650 ,
GSM1519651 ,
GSM1519652 ,
GSM1519653 ,
GSM1519654 ,
GSM1519655 ,
GSM1901104 ,
GSM1901105 ,
GSM1901106 ,
GSM1901107 ,
GSM1973512 ,
GSM1973513 ,
GSM2178831 ,
GSM2178832 ,
GSM2178833 ,
GSM2178834 ,
GSM2178835 ,
GSM2178836 ,
GSM2178837 ,
GSM2178838 ,
GSM2178839 ,
GSM2178840 ,
GSM2178841 ,
GSM2178842 ,
GSM2178843 ,
GSM2178844 ,
GSM2178845 ,
GSM2496446 ,
GSM2496447 ,
GSM2496448 ,
GSM2496449 ,
GSM2644828 ,
GSM2644829 ,
GSM2644830 ,
GSM2644831 ,
GSM2644832 ,
GSM2644833 ,
GSM2644834 ,
GSM2644835 ,
GSM2644836 ,
GSM2644837 ,
GSM3687464 ,
GSM3687465 ,
GSM3687466 ,
GSM3687467 ,
GSM3687468 ,
GSM3687469 ,
GSM3687470 ,
GSM3687471 ,
GSM3687472 ,
GSM3687473 ,
GSM3687474 ,
GSM3687475 ,
GSM3687476 ,
GSM3687477 ,
GSM3687478 ,
GSM3687479 ,
GSM3687480 ,
GSM3687481 ,
GSM3687482 ,
GSM3687483 ,
GSM3687484 ,
GSM3687485 ,
GSM3687486 ,
GSM3687487 ,
GSM3687488 ,
GSM3687489 ,
GSM3687490 ,
GSM3687491 ,
GSM3687492 ,
GSM3687493 ,
GSM3687494 ,
GSM3687495 ,
GSM3687496 ,
GSM3687497 ,
GSM3687498 ,
GSM3687499 ,
GSM3687500 ,
GSM3687501 ,
GSM3687502 ,
GSM3687503 ,
GSM3687504 ,
GSM3687505 ,
GSM3687506 ,
GSM3687507 ,
GSM3687508 ,
GSM3687509 ,
GSM3687510 ,
GSM3687511 ,
GSM3687512 ,
GSM3687513 ,
GSM3687514 ,
GSM3687515 ,
GSM3687516 ,
GSM3687517 ,
GSM3687518 ,
GSM3687519 ,
GSM3687520 ,
GSM3687521 ,
GSM3687522 ,
GSM3687523 ,
GSM3687524 ,
GSM3687525 ,
GSM3687526 ,
GSM3687527 ,
GSM3687528 ,
GSM3687529 ,
GSM3687530 ,
GSM3687531 ,
GSM3687532 ,
GSM3687533 ,
GSM3687534 ,
GSM3687535 ,
GSM3687536 ,
GSM3687537 ,
GSM3687538 ,
GSM3687539 ,
GSM3687540 ,
GSM3687541 ,
GSM3687542 ,
GSM3687543 ,
GSM3687544 ,
GSM3687545 ,
GSM3687546 ,
GSM3687547 ,
GSM3687548 ,
GSM3687549 ,
GSM3687550 ,
GSM3687551 ,
GSM3687552 ,
GSM3687553 ,
GSM3687554 ,
GSM3687555 ,
GSM3687556 ,
GSM3687557 ,
GSM3687558 ,
GSM3687559 ,
GSM3687560 ,
GSM3687561 ,
GSM3687562 ,
GSM3687563 ,
GSM3687564 ,
GSM3687565 ,
GSM3687566 ,
GSM3687567 ,
GSM3687568 ,
GSM3687569 ,
GSM3687570 ,
GSM3687571 ,
GSM3687572 ,
GSM3687573 ,
GSM3687574 ,
GSM3687575 ,
GSM3687576 ,
GSM3687577 ,
GSM3687578 ,
GSM3687579 ,
GSM3687580 ,
GSM3687581 ,
GSM3687582 ,
GSM3687583 ,
GSM3687584 ,
GSM3687585 ,
GSM3687586 ,
GSM3687587 ,
GSM3687588 ,
GSM3687589 ,
GSM3687590 ,
GSM3687591 ,
GSM3687592 ,
GSM3687593 ,
GSM3687594 ,
GSM3687595 ,
GSM3687596 ,
GSM3687597 ,
GSM3687598 ,
GSM3687599 ,
GSM3687600 ,
GSM3687601 ,
GSM3687602 ,
GSM3687603 ,
GSM3687604 ,
GSM3687605 ,
GSM3687606 ,
GSM3687607 ,
GSM3687608 ,
GSM3687609 ,
GSM3687610 ,
GSM3687611 ,
GSM3687612 ,
GSM3687613 ,
GSM3687614 ,
GSM3687615 ,
GSM3687616 ,
GSM3687617 ,
GSM3687618 ,
GSM3687619 ,
GSM3687620 ,
GSM3687621 ,
GSM3687622 ,
GSM3687623 ,
GSM3687624 ,
GSM3687625 ,
GSM3687626 ,
GSM3687627 ,
GSM3687628 ,
GSM3687629 ,
GSM3687630 ,
GSM3687631 ,
GSM3687632 ,
GSM3687633 ,
GSM3687634 ,
GSM3687635 ,
GSM3687636 ,
GSM3687637 ,
GSM3687638 ,
GSM3687639 ,
GSM3687640 ,
GSM3687641 ,
GSM3687642 ,
GSM3687643 ,
GSM3687644 ,
GSM3687645 ,
GSM3687646 ,
GSM3687647 ,
GSM3687648 ,
GSM3687649 ,
GSM3687650 ,
GSM3687651 ,
GSM3687652 ,
GSM3687653 ,
GSM3687654 ,
GSM3687655 ,
GSM3687656 ,
GSM3687657 ,
GSM3687658 ,
GSM3687659 ,
GSM3687660 ,
GSM3687661 ,
GSM3687662 ,
GSM3687663 ,
GSM3687664 ,
GSM3687665 ,
GSM3687666 ,
GSM3687667 ,
GSM3687668 ,
GSM3687669 ,
GSM3687670 ,
GSM3687671 ,
GSM3687672 ,
GSM3687673 ,
GSM3687674 ,
GSM3687675 ,
GSM3687676 ,
GSM3687677 ,
GSM3687678 ,
GSM3687679 ,
GSM3687680 ,
GSM3687681 ,
GSM3687682 ,
GSM3687683 ,
GSM3687684 ,
GSM3687685 ,
GSM3687686 ,
GSM3687687 ,
GSM3687688 ,
GSM3687689 ,
GSM3687690 ,
GSM3687691 ,
GSM3687692 ,
GSM3687693 ,
GSM3687694 ,
GSM3687695 ,
GSM3687696 ,
GSM3687697 ,
GSM3687698 ,
GSM3687699 ,
GSM3687700 ,
GSM3687701 ,
GSM3687702 ,
GSM3687703 ,
GSM3687704 ,
GSM3687705 ,
GSM3687706 ,
GSM3687707 ,
GSM3687708 ,
GSM3687709 ,
GSM3687710 ,
GSM3687711 ,
GSM3687712 ,
GSM3687713 ,
GSM3687714 ,
GSM3687715 ,
GSM3687716 ,
GSM3687717 ,
GSM3687718 ,
GSM3687719 ,
GSM3687720 ,
GSM3687721 ,
GSM3687722 ,
GSM3687723 ,
GSM3687724 ,
GSM3687725 ,
GSM3687726 ,
GSM3687727 ,
GSM3687728 ,
GSM3687729 ,
GSM3687730 ,
GSM3687731 ,
GSM3687732 ,
GSM3687733 ,
GSM3687734 ,
GSM3687735 ,
GSM3687736 ,
GSM3687737 ,
GSM3687738 ,
GSM3687739 ,
GSM3687740 ,
GSM3687741 ,
GSM3687742 ,
GSM3687743 ,
GSM3687744 ,
GSM3687745 ,
GSM3687746 ,
GSM3687747 ,
GSM3687748 ,
GSM3687749 ,
GSM3687750 ,
GSM3687751 ,
GSM3687752 ,
GSM3687753 ,
GSM3687754 ,
GSM3687755 ,
GSM3687756 ,
GSM3687757 ,
GSM3687758 ,
GSM3687759 ,
GSM3687760 ,
GSM3687761 ,
GSM3687762 ,
GSM3687763 ,
GSM3687764 ,
GSM3687765 ,
GSM3687766 ,
GSM3687767 ,
GSM3687768 ,
GSM3687769 ,
GSM3687770 ,
GSM3687771 ,
GSM3687772 ,
GSM3687773 ,
GSM3687774 ,
GSM3687775 ,
GSM3687776 ,
GSM3687777 ,
GSM3687778 ,
GSM3687779 ,
GSM3687780 ,
GSM3687781 ,
GSM3687782 ,
GSM3687783 ,
GSM3687784 ,
GSM3687785 ,
GSM3687786 ,
GSM3687787 ,
GSM3687788 ,
GSM3687789 ,
GSM3687790 ,
GSM3687791 ,
GSM3687792 ,
GSM3687793 ,
GSM3687794 ,
GSM3687795 ,
GSM3687796 ,
GSM3687797 ,
GSM3687798 ,
GSM3687799 ,
GSM3687800 ,
GSM3687801 ,
GSM3687802 ,
GSM3687803 ,
GSM3687804 ,
GSM3687805 ,
GSM3687806 ,
GSM3687807 ,
GSM3687808 ,
GSM3687809 ,
GSM3687810 ,
GSM3687811 ,
GSM3687812 ,
GSM3687813 ,
GSM3687814 ,
GSM3687815 ,
GSM3687816 ,
GSM3687817 ,
GSM3897501 ,
GSM3897502 ,
GSM3897503 ,
GSM3897504 ,
GSM3902576 ,
GSM3902577 ,
GSM3902578 ,
GSM3902579 ,
GSM4195043 ,
GSM4195044 ,
GSM4195045 ,
GSM4195046 Series (20)
GSE35855 Lunatic fringe deficiency cooperates with the Met/Caveolin amplicon to induce basal-like breast cancer
GSE45778 Murine polyploid trophoblast giant cells (TGCs) from day E9.5 implantation sites (experimental) vs E9.5 diploid embryos (control)
GSE45787 Murine polyploid trophoblast giant cells from day E9.5 implantation sites
GSE49827 Transformation of the Fallopian Tube Secretory Epithelium Leads to High-grade Serous Ovarian Cancer in BRCA/P53/PTEN Models
GSE55354 Genomic characterization of clones derived from a murine acute myeloid leukemia cell line for the description of genes involved in immunogenicity (dataset 2)
GSE55355 Genomic characterization of clones derived from a murine acute myeloid leukemia cell line for the description of genes involved in immunogenicity
GSE62101 aCGH data of Rb/p53 deficient mammary tumors
GSE73703 Genome-wide maps of nuclear lamina interactions in AML12 cells.
GSE76061 Truncating erythropoietin receptor rearrangements in acute lymphoblastic leukemia
GSE81967 Mouse tumors: Chaos3 Mammary Tumors (MTs) vs. Controls
GSE95115 Genome-wide maps of nuclear lamina interactions in AML12 cells upon HNRNPU KD [DamID]
GSE95116 The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture
GSE99495 microRNA-143/145 loss induces Ras-signaling and cooperates with Pten-deficiency to promote basal-like breast cancer [CGH]
GSE99496 microRNA-143/145 loss induces Ras-signaling and cooperates with Pten-deficiency to promote basal-like breast cancer
GSE125037 The Nuclear Matrix Protein SAFB Cooperates with Major Satellite RNAs to Stabilize Heterochromatin Architecture Partially through Phase Separation
GSE128869 CGH array used to identify de novo copy number variations in offspring of BaP exposed parents.
GSE132957 Genome-wide maps of nuclear lamina interactions in AML12 cells upon G9a/GLP inhibition [DamID]
GSE133224 TOPORS, a tumor suppressor protein, maintains higher-order chromatin organization in mouse hepatocytes [DamID]
GSE134624 TOPORS, a tumor suppressor protein, maintains higher-order chromatin organization in mouse hepatocytes
GSE141109 Genome-wide maps of nuclear lamina interactions in AML12 cells upon Safb KD [DamID]
Data table header descriptions ID Agilent Feature Number
COL Column
ROW Row
ProbeName Agilent Probe Name
GB_ACC GenBank or RefSeq Accession
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 37)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description
Data table ID COL ROW ProbeName GB_ACC SPOT_ID CONTROL_TYPE GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION 1
534
1824
MmCGHBrightCorner
pos
2
534
1822
DarkCorner
pos
3
534
1820
DarkCorner
pos
4
534
1818
A_67_P18911161
NM_001083616 FALSE
Cacna1d
calcium channel, voltage-dependent, L type, alpha 1D subunit
ref|NM_001083616|ref|NM_028981
chr14:31015744-31015803
NC_000080.5 31015744
31015803
mm|qB
Mus musculus calcium channel, voltage-dependent, L type, alpha 1D subunit (Cacna1d), transcript variant 2, mRNA.
5
534
1816
A_67_P07005416
NM_027347 FALSE
Med23
mediator complex subunit 23
ref|NM_027347
chr10:24602007-24602066
NC_000076.5 24602007
24602066
mm|qA4
Mus musculus mediator complex subunit 23 (Med23), mRNA.
6
534
1814
A_67_P04555217
NM_181547 FALSE
Nostrin
nitric oxide synthase trafficker
ref|NM_181547
chr2:69005428-69005487
NC_000068.6 69005428
69005487
mm|qC2
Mus musculus nitric oxide synthase trafficker (Nostrin), mRNA.
7
534
1812
A_67_P07184425
NM_001081432 FALSE
Ptprq
protein tyrosine phosphatase, receptor type, Q
ref|NM_001081432
chr10:107136409-107136468
NC_000076.5 107136409
107136468
mm|qD1
Mus musculus protein tyrosine phosphatase, receptor type, Q (Ptprq), mRNA.
8
534
1810
A_67_P01033878
NM_001163223 FALSE
Zfp804b
zinc finger protein 804B
ref|NM_001163223
chr5:7120902-7120961
NC_000071.5 7120902
7120961
mm|qA1
Mus musculus zinc finger protein 804B (Zfp804b), mRNA.
9
534
1808
A_67_P04867682
FALSE
chr3:33373632-33373689
NC_000069.5 33373632
33373689
mm|qA3
10
534
1806
A_67_P01962304
NM_013646 FALSE
Rora
RAR-related orphan receptor alpha
ref|NM_013646
chr9:68626616-68626675
NC_000075.5 68626616
68626675
mm|qC
Mus musculus RAR-related orphan receptor alpha (Rora), mRNA.
11
534
1804
A_67_P06539924
NM_175188 FALSE
March1
membrane-associated ring finger (C3HC4) 1
ref|NM_175188
chr8:68797159-68797218
NC_000074.5 68797159
68797218
mm|qB3.2
Mus musculus membrane-associated ring finger (C3HC4) 1 (March1), mRNA.
12
534
1802
A_67_P01192354
NM_001040691 FALSE
Ung
uracil DNA glycosylase
ref|NM_001040691|ref|NM_011677
chr5:114581803-114581862
NC_000071.5 114581803
114581862
mm|qF
Mus musculus uracil DNA glycosylase (Ung), transcript variant 1, mRNA.
13
534
1800
A_67_P05196281
NM_019586 FALSE
Ube2j1
ubiquitin-conjugating enzyme E2, J1
ref|NM_019586
chr4:33122299-33122358
NC_000070.5 33122299
33122358
mm|qA5
Mus musculus ubiquitin-conjugating enzyme E2, J1 (Ube2j1), mRNA.
14
534
1798
A_67_P02644976
FALSE
chr13:22204047-22204094
NC_000079.5 22204047
22204094
mm|qA3.1
15
534
1796
A_67_P08312941
NM_019472 FALSE
Myo10
myosin X
ref|NM_019472
chr15:25734695-25734754
NC_000081.5 25734695
25734754
mm|qB1
Mus musculus myosin X (Myo10), mRNA.
16
534
1794
A_67_P03256824
NM_010587 FALSE
Itsn1
intersectin 1 (SH3 domain protein 1A)
ref|NM_010587
chr16:91903640-91903699
NC_000082.5 91903640
91903699
mm|qC4
Mus musculus intersectin 1 (SH3 domain protein 1A) (Itsn1), transcript variant 1, mRNA.
17
534
1792
A_67_P07590969
NM_178767 FALSE
Tmem195
transmembrane protein 195
ref|NM_178767
chr12:38120651-38120710
NC_000078.5 38120651
38120710
mm|qA3
Mus musculus transmembrane protein 195 (Tmem195), mRNA.
18
534
1790
A_67_P02154579
FALSE
chr10:70668625-70668684
NC_000076.5 70668625
70668684
mm|qB5.3
19
534
1788
A_67_P06131692
NR_002857 FALSE
Psg-ps1
pregnancy specific glycoprotein pseudogene 1
ref|NR_002857
chr7:18261633-18261692
NC_000073.5 18261633
18261692
mm|qA2
Mus musculus pregnancy specific glycoprotein pseudogene 1 (Psg-ps1), non-coding RNA.
20
534
1786
A_67_P14514604
NM_207683 FALSE
Pik3c2g
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
ref|NM_207683
chr6:139584332-139584391
NC_000072.5 139584332
139584391
mm|qG2
Mus musculus phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide (Pik3c2g), transcript variant 1, mRNA.
974016 184032 Kbytes .Supplementary data files not provided
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