GEO help: Mouse over screen elements for information.
Status
Public on Jul 01, 2010
Title
UW_Rhodobacter_sphaeroides_2.4.1_385K_v2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Cereibacter sphaeroides 2.4.1 Manufacturer
NimbleGen
Manufacture protocol
See manufacturer's web site (www.nimblegen.com)
Description
Oligo probes are 45bp in average, tiling the genome sequences with about 35-bp overlap between consecutive probes. Every other probe hybridizes to the reverse strand.
Contributor(s)
Dufour YS Citation(s)
18723027 Submission date
May 27, 2010
Last update date
Jul 01, 2010
Contact name
Yann S Dufour
Organization name
University of Wisconsin - Madison
Department
Bacteriology
Lab
Timothy Donohue
Street address
1550 Linden Drive
City
Madison
State/province
WI
ZIP/Postal code
53706
Country
USA
Samples (21)
GSM547633 , GSM547634 , GSM547635 , GSM547636 , GSM547637 , GSM547638
GSM547639 ,
GSM547640 ,
GSM547641 ,
GSM560310 ,
GSM560311 ,
GSM560312 ,
GSM560313 ,
GSM560314 ,
GSM560315 ,
GSM978036 ,
GSM978037 ,
GSM978038 ,
GSM978039 ,
GSM978040 ,
GSM978041 Series (4)
GSE22027 FnrL regulon in Rhodobacter sphaeroides
GSE22576 RpoE regulon in Rhodobacter sphaeroides
GSE39711 RpoHI and RpoHII regulons in Rhodobacter sphaeroides 2.4.1 from chromatin immuno-precipitation
GSE39806 RpoHI and RpoHII regulons in Rhodobacter sphaeroides 2.4.1
Data table header descriptions ID Unique identification number for the probe design
SEQUENCE Oligonucleotide probe sequence
CHROMOSOME Chromosome identification
RANGE_GB RefSeq accession.version of chromosome
RANGE_START Start coordinate relative to RANGE_GB
LENGTH Length
RANGE_END End coordinate relative to RANGE_GB
RANGE_STRAND Forward or reverse
Data table ID SEQUENCE CHROMOSOME RANGE_GB RANGE_START LENGTH RANGE_END RANGE_STRAND RSPH241_F_00000001
GAGAGTTTGATCCTGGCTCAGAATGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCG
chr1
NC_007493.1 7
62
68
+
RSPH241_R_00000002
GTCCGAAGACTTCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCATTCTGAGCCAGG
chr1
NC_007493.1 18
63
80
-
RSPH241_F_00000003
TGGCGGCAGGCCTAACACATGCAAGTCGAGCGAAGTCTTCGGACTTAGCGGCGGACGG
chr1
NC_007493.1 37
58
94
+
RSPH241_R_00000004
CCCACGCGTTACTCACCCGTCCGCCGCTAAGTCCGAAGACTTCGCTCGACTTGCATG
chr1
NC_007493.1 54
57
110
-
RSPH241_F_00000005
GCGAAGTCTTCGGACTTAGCGGCGGACGGGTGAGTAACGCGTGGGAACGTGCC
chr1
NC_007493.1 66
53
118
+
RSPH241_R_00000006
GGGCTATTCCGAAGCAAAGGGCACGTTCCCACGCGTTACTCACCCGTCCGCCG
chr1
NC_007493.1 85
53
137
-
RSPH241_F_00000007
CGCGTGGGAACGTGCCCTTTGCTTCGGAATAGCCCCGGGAAACTGGGAG
chr1
NC_007493.1 103
49
151
+
RSPH241_R_00000008
GGGCACATTCGGTATTACTCCCAGTTTCCCGGGGCTATTCCGAAGCAAAGGGC
chr1
NC_007493.1 116
53
168
-
RSPH241_F_00000009
CGGAATAGCCCCGGGAAACTGGGAGTAATACCGAATGTGCCCTTTGGGGG
chr1
NC_007493.1 127
50
176
+
RSPH241_R_00000010
GCCGATAAATCTTTCCCCCAAAGGGCACATTCGGTATTACTCCCAGTTTCCC
chr1
NC_007493.1 139
52
190
-
RSPH241_F_00000011
CGAATGTGCCCTTTGGGGGAAAGATTTATCGGCAAAGGATCGGCCCGCGTTGG
chr1
NC_007493.1 158
53
210
+
RSPH241_R_00000012
CCAACTACCTAATCCAACGCGGGCCGATCCTTTGCCGATAAATCTTTCCCCC
chr1
NC_007493.1 172
52
223
-
RSPH241_F_00000013
CGGCAAAGGATCGGCCCGCGTTGGATTAGGTAGTTGGTGGGTAATGGCCTACC
chr1
NC_007493.1 187
53
239
+
RSPH241_R_00000014
GGATCGTTGGCTGGTAGGCCATTACCCACCAACTACCTAATCCAACGCGGGCCG
chr1
NC_007493.1 198
54
251
-
RSPH241_F_00000015
AGGTAGTTGGTGGGTAATGGCCTACCAGCCAACGATCCATAGCTGGTTTGAGAGGATG
chr1
NC_007493.1 214
58
271
+
RSPH241_R_00000016
CCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGATCGTTGGCTGGTAGGCCATTACCC
chr1
NC_007493.1 225
62
286
-
RSPH241_F_00000017
CCAGCCAACGATCCATAGCTGGTTTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC
chr1
NC_007493.1 238
64
301
+
RSPH241_R_00000018
CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGG
chr1
NC_007493.1 250
63
312
-
RSPH241_F_00000019
GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG
chr1
NC_007493.1 263
58
320
+
RSPH241_R_00000020
CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTG
chr1
NC_007493.1 274
52
325
-
353081 36074 Kbytes .Supplementary file Size Download File type/resource GPL10463_2007-06-20_R_sphaeroides_long85_v2.ndf.gz
16.1 Mb
(ftp) (http) NDF
GPL10463_2007-06-20_R_sphaeroides_long85_v2.pos.gz
2.4 Mb
(ftp) (http) POS
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