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Platform GPL10767 Query DataSets for GPL10767
Status Public on Jul 25, 2012
Title Progenika Biopharma Pseudomonas putida MPA-02-0001
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Pseudomonas putida KT2440
Manufacturer Progenika Biopharma
Manufacture protocol See manufacturer's web site.
 
 
Submission date Aug 06, 2010
Last update date Jul 26, 2012
Contact name Victor de Lorenzo
Organization name CNB-CSIC
Department Systems Biology
Street address Darwin 3
City Campus de Cantoblanco
State/province Madrid
ZIP/Postal code 28049
Country Spain
 
Samples (3) GSM575620, GSM575621, GSM575622
Series (1)
GSE23499 The IHF regulon of exponentially growing Pseudomonas putida cells

Data table header descriptions
ID
Block Slide block number
Column Spot column number in each block
Row Spot row number in each block
ORF Locus tag
GB_RANGE Accession.version[start coordinate..end coordinate]
SPOT_ID
Name Gene name as supplied by array manufacturer
Description Gene description as supplied by array manufacturer
SEQUENCE Sequence of oligonucleotide

Data table
ID Block Column Row ORF GB_RANGE SPOT_ID Name Description SEQUENCE
1 1 1 1 NC_003350.1[20626..20940] gi|18150858:20626-20940 AATGGAAGAAGGTTGCGCCCCTCTTTGCTTCCAAACGCCTGGCTATCTCG
2 1 2 1 NC_003350.1[20626..20940] gi|18150858:20626-20940 putative transcriptional repressor gi|18150858:20626-20940 AATGGAAGAAGGTTGCGCCCCTCTTTGCTTCCAAACGCCTGGCTATCTCG
3 1 3 1 NC_003350.1[106375..105110] gi|18150858:c106375-105110 putative mating pair formation protein gi|18150858:c106375-105110 AGAATGAAGAACTGGTCGCGGCCAGTCCGCGCAAGGTGATGGATCCGCCC
4 1 4 1 NC_003350.1[106375..105110] gi|18150858:c106375-105110 putative mating pair formation protein gi|18150858:c106375-105110 AGAATGAAGAACTGGTCGCGGCCAGTCCGCGCAAGGTGATGGATCCGCCC
5 1 5 1 control DMSO Control_0 DMSO
6 1 6 1 control DMSO Control_0 DMSO
7 1 7 1 control DMSO Control_0 DMSO
8 1 8 1 control DMSO Control_0 DMSO
9 1 9 1 NC_003350.1[22773..23357] gi|18150858:22773-23357 putative transcriptional regulator protein gi|18150858:22773-23357 AAGGGTTGGTACAGCAGCACGGCTACAACGGCTTCTCATACGACGACGTG
10 1 10 1 NC_003350.1[22773..23357] gi|18150858:22773-23357 putative transcriptional regulator protein gi|18150858:22773-23357 AAGGGTTGGTACAGCAGCACGGCTACAACGGCTTCTCATACGACGACGTG
11 1 11 1 NC_003350.1[109096..108704] gi|18150858:c109096-108704 hypothetical protein gi|18150858:c109096-108704 GAACCGGATGACGAAGCGGCGCCGGTAGTCGAGGTGCAAACCGGAAATCC
12 1 12 1 NC_003350.1[109096..108704] gi|18150858:c109096-108704 hypothetical protein gi|18150858:c109096-108704 GAACCGGATGACGAAGCGGCGCCGGTAGTCGAGGTGCAAACCGGAAATCC
13 1 13 1 control DMSO Control_0 DMSO
14 1 14 1 control DMSO Control_0 DMSO
15 1 15 1 control DMSO Control_0 DMSO
16 1 16 1 control DMSO Control_0 DMSO
17 1 1 2 NC_003350.1[16158..16379] gi|18150858:16158-16379 hypothetical protein gi|18150858:16158-16379 CCGCTGCGCGGTTGGCAGAGCATCGCAAGAAGTGGTATTCAGCCGCCGAG
18 1 2 2 NC_003350.1[16158..16379] gi|18150858:16158-16379 hypothetical protein gi|18150858:16158-16379 CCGCTGCGCGGTTGGCAGAGCATCGCAAGAAGTGGTATTCAGCCGCCGAG
19 1 3 2 NC_003350.1[96571..96954] gi|18150858:96571-96954 putative TraA protein gi|18150858:96571-96954 CAAAACAGTACCCATCCGGTTCAACTCGGAGCAGCTGGCCAGGGTCGAAG
20 1 4 2 NC_003350.1[96571..96954] gi|18150858:96571-96954 putative TraA protein gi|18150858:96571-96954 CAAAACAGTACCCATCCGGTTCAACTCGGAGCAGCTGGCCAGGGTCGAAG

Total number of rows: 11520

Table truncated, full table size 1896 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10767_putida.gal.gz 148.1 Kb (ftp)(http) GAL

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