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Status
Public on Jun 01, 2011
Title
Agilent 16K botuarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Clostridium botulinum A str. ATCC 3502 Manufacturer
Agilent
Manufacture protocol
Agilent 60mer
Submission date
Jan 12, 2011
Last update date
Jun 01, 2011
Contact name
Panu Somervuo
E-mail(s)
[email protected] Organization name
University of Helsinki
Street address
Viikinkaari 4
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Samples (40)
GSM654471 , GSM654472 , GSM654473 , GSM1226990 , GSM1226991 , GSM1226992
GSM1246078 ,
GSM1246079 ,
GSM1246080 ,
GSM1246081 ,
GSM1246082 ,
GSM1246083 ,
GSM1886180 ,
GSM1886183 ,
GSM1886185 ,
GSM1886187 ,
GSM1886190 ,
GSM1886192 ,
GSM1886194 ,
GSM1886197 ,
GSM1886199 ,
GSM1886202 ,
GSM1886204 ,
GSM1886208 ,
GSM1886210 ,
GSM1886212 ,
GSM1886215 ,
GSM1886218 ,
GSM1886220 ,
GSM1886222 ,
GSM1886224 ,
GSM1886226 ,
GSM1886228 ,
GSM1886231 ,
GSM1886233 ,
GSM1886236 ,
GSM1886239 ,
GSM1886241 ,
GSM1886244 ,
GSM1886246 Series (3)
GSE26587 The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in cold tolerance of Group I Clostridium botulinum ATCC 3502
GSE51465 Transcriptomic analysis of (Group I) Clostridium botulinum ATCC 3502 cold shock response
GSE73093 Clostridium botulinum whole genome expression profile after heat shock in continous culture
Data table header descriptions ID ROW probe location on array
COLUMN probe location on array
PROBE_ID probe identifier, C.botulinum related probes start with 'CBO'. They have format 'CBOnum_pos' where 'pos' relates the position of probe in gene sequence, if name contains 'c' probe is for anti-sense strand.
ORF ORF Name
SEQUENCE probe sequence
GENOME_ACC GenBank Genome Accession number
SPOT_ID spot id
Data table ID ROW COLUMN PROBE_ID ORF SEQUENCE GENOME_ACC SPOT_ID 1
1
1
GE_BrightCorner
--GE_BrightCorner
2
1
2
GE_BrightCorner
--GE_BrightCorner
3
1
3
DarkCorner
--DarkCorner
4
1
4
DarkCorner
--DarkCorner
5
1
5
CBO0779_338
CBO0779 TTGCTCCGTTGAAAATCAAATTTTCATTGGAAGGTGGTTATATTATGGATTACAAAATTG
NC_009495 6
1
6
CBO2558_1628
CBO2558 AAAAACATTTATCTAATACTAGATCTTCAGGCGCTGATGACTCTTTAAAGTTAGTTCCAG
NC_009495 7
1
7
CBO2282_412
CBO2282 TTTAAAATATTTATGATTTCATTTATTTTTCAAGTGGCTCTGGCACCGATGGCAATTTTA
NC_009495 8
1
8
CBO3539_2814
CBO3539 AACCTATAAAAGGGATAAGATACTTACAGAAGTAGCAGAAAAACGATTGAAAGCCATAAA
NC_009495 9
1
9
CBO3178_125
CBO3178 AACCCCCTATAATAAGCATAGCTATAAGACCTGAAAGGCTTTCTTTTCATTATCTAAAAG
NC_009495 10
1
10
CBO3007c_402
CBO3007 CTTTTACATTTGTTAAGGGATGGTAATCTACATTTGCTTCATTTTCGTTAGACTTCATCA
NC_009495 11
1
11
CBO2585c_840
CBO2585 GTGAACTATATTCATTGGTATCTGAATATCTTCTTTCTTCACATCCCGTTAGCATCTTAC
NC_009495 12
1
12
CBO1538_319
CBO1538 ATTGTTTTTTTTAAGGCCAAAACACCAGATTTAATTGCAGCTATAGTTGCTATTATTTGT
NC_009495 13
1
13
CBO1753_64_r2
CBO1753 AATCAATTAGAAATATATAAACTATCAATTTTGAGGGTACTTCGATAATTTTTTTTTTTT
NC_009495 14
1
14
CBO3198_276
CBO3198 GGATACATTAGCAACATCCTATGCTCTAGCCACTGCTATTAAAAAAATAGATTACGATAT
NC_009495 15
1
15
CBO0355_306
CBO0355 ATATTTGCCAGGAAAAGATCATAATATAACGACTAAAGCAGAAACTACTCTAAAAGCACT
NC_009495 16
1
16
CBO3545_670
CBO3545 ATGGGTGTAAATTCAAGAGTTCAACTTTCAGAAGCAGAGATAGTTATGAGAAAAAGAATA
NC_009495 17
1
17
CBO1422_36_r1
CBO1422 AGGAGCTTTTGCAGTGTTTTTTGCATATCTTCTTTTTTATGTACTTAGAGAAAACAGTAA
NC_009495 18
1
18
CBO3412_430
CBO3412 CCTTGGTCTTATTTAGAAGCTATGAAAAGGTTAGGTTCCTCTAGTGAAGAAACAATTATT
NC_009495 19
1
19
ETG07_105829
--ETG07_105829
20
1
20
CBO3423_870
CBO3423 TGAAGCATTTGAAAAAACTGTAGACCTTACTAAACATGGATATCTATCCGTAGAAATGAG
NC_009495
15744 1564 Kbytes .Supplementary data files not provided
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