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Platform GPL11581 Query DataSets for GPL11581
Status Public on Jan 19, 2011
Title Agilent-021656 Sphingomonas wittichii RW1 [Feature Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rhizorhabdus wittichii RW1
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Sphingomonas wittichii RW1

Arrays of this design have barcodes that begin with 16021656 or 2521656.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 19, 2011
Last update date Apr 17, 2012
Contact name David R Johnson
E-mail(s) [email protected]
Organization name Eawag
Department Environmental Microbiology
Street address Uberlandstrasse 133
City Dübendorf
ZIP/Postal code 8600
Country Switzerland
 
Samples (25) GSM657248, GSM657249, GSM657250, GSM657251, GSM657252, GSM657253 
Series (1)
GSE26705 Global transcriptome profiling after exposure to solute, matric, and sand desiccation stress in S. wittichii RW1
Relations
Alternative to GPL15452

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
ORF ORF Name
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME ORF CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner pos --GE_BrightCorner
2 96 162 DarkCorner pos --DarkCorner
3 96 160 DarkCorner pos --DarkCorner
4 96 158 Swit_1307_1 Swit_1307 FALSE unmapped ACGTCGATCAACGCCTTGAACGGCTGGCCGAAATGCTCCGCCAGCGGGTC
5 96 156 NA ignore --NA
6 96 154 Swit_4712_1 Swit_4712 FALSE unmapped GCGGTCCATTCCGCCGATGTGCTGCTGTTCATGAAGGGCACGCCGCTCTT
7 96 152 Swit_1187_1 Swit_1187 FALSE unmapped ACCGGCCCGCGCAGCAGCAGGAGCAGATGGATGCGGTCGACCTCGATCGC
8 96 150 Swit_5071_3 Swit_5071 FALSE unmapped CGATGGCCCTGCTGCAGCTGACCTATCGCGACCAGTTGTTCCCGCGCGAG
9 96 148 NA ignore --NA
10 96 146 Swit_4670_3 Swit_4670 FALSE unmapped TGCCGGCAAGCCCTGTCGCGTGACGGGCGATCTGTTCGTGCTCGGCGCCA
11 96 144 Swit_5313_2 Swit_5313 FALSE unmapped CGAGGGGATGGGCGATGGGGACGCGCTGCATCCGCTGCAACAGGCGTTTT
12 96 142 Swit_4029_1 Swit_4029 FALSE unmapped GGTGGCGAGCTGGCTGGCCAAGCAGCGGCTCGCCTGCCTGATGCCGCTCG
13 96 140 NA ignore --NA
14 96 138 Swit_1229_3 Swit_1229 FALSE unmapped CGGCCTTCACCTTTGAGGATGTGTTCCGGGGCAAGGAACAGCCGCTGCGA
15 96 136 Swit_2901_2 Swit_2901 FALSE unmapped AAGTTACGGCGGCTATAGTGGTGGCGGTTTCGGCGGTGACCGTTTCGGCG
16 96 134 Swit_1780_1 Swit_1780 FALSE unmapped ACATCACCACGCGCGAGCAGTGCCCGCACCTGCCGGTCACGCCGCAGGAG
17 96 132 NA ignore --NA
18 96 130 Swit_2327_1 Swit_2327 FALSE unmapped GCGCTATCTGGGCGGCTGGCAGCTCACCAGCCGGCAGCGCGACTTCGGGG
19 96 128 NA ignore --NA
20 96 126 Swit_4144_2 Swit_4144 FALSE unmapped CATGCTGATCTCCGCCTTCGCGCAGATCATTCCTGACAGGCTTCCGGCGC

Total number of rows: 15744

Table truncated, full table size 1355 Kbytes.




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Supplementary data files not provided
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