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| Status |
Public on Jun 26, 2011 |
| Title |
Agilent-023310 ISB Sulfolobus 244K 60mer tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Saccharolobus solfataricus P2 |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
60-mer probes were tiled every 25 nt. Plus extras, random control probes, and replicate probes. See manufacturer's web site at http://www.agilent.com/
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| Support |
glass |
| Coating |
other |
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| Description |
Whole genome tiling array for Sulfolobus solfataricus P2
Agilent designID: 023310
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| Web link |
http://www.agilent.com/
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| Contributor(s) |
Yoon S, Bare JC, Reiss DJ, Baliga NS |
| Submission date |
Jan 19, 2011 |
| Last update date |
Jan 20, 2011 |
| Contact name |
Sung Ho Yoon |
| Organization name |
Konkuk University
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| Department |
Department of Bioscience and Biotechnology
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| Street address |
120 Neungdong-ro, Gwangjin-gu
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| City |
Seoul |
| ZIP/Postal code |
05029 |
| Country |
South Korea |
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| Samples (16)
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GSM658906, GSM658907, GSM658908, GSM658909, GSM658910, GSM658933
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| Series (2) |
| GSE26779 |
Sulfolobus solfataricus P2 growth curve, tiling arrays |
| GSE26782 |
Parallel evolution of transcriptome structure during genome reorganization |
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| Data table header descriptions |
| ID |
|
| PROBE_ID |
Probe identifier (ex, extra probe; fwd, probe for forward strand; rev, probe for reverse strand; rnd, random control probes; rep, replicate probe) |
| GENOME_ACC |
GenBank Genome Accession |
| ORF |
locus tag |
| CHROMOSOMAL_LOCATION |
Chromosomal Location (start-end) |
| CHROMOSOME |
|
| START |
probe start position on CHROMOSOME |
| END |
probe end position on CHROMOSOME |
| SEQUENCE |
Probe Sequence |
| SPOT_ID |
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| Data table |
| ID |
PROBE_ID |
GENOME_ACC |
ORF |
CHROMOSOMAL_LOCATION |
CHROMOSOME |
START |
END |
SEQUENCE |
SPOT_ID |
| 1 |
GE_BrightCorner |
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|
CONTROL |
| 2 |
DarkCorner |
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CONTROL |
| 3 |
DarkCorner |
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CONTROL |
| 4 |
sso_fwd_016851 |
NC_002754.1 |
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chr1:421251-421310 |
chr1 |
421251 |
421310 |
GTAGAATATATAGATTATATAGATTATCTTTTTATATATTAAAAATAGAAGTATGAGTAG |
|
| 5 |
sso_fwd_116125 |
NC_002754.1 |
|
chr1:2903101-2903160 |
chr1 |
2903101 |
2903160 |
TTTAAGACCTATAGAGTCCACAGTACAGTAGTCGACTATAGGAACGCCATGAAGAGCGCA |
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| 6 |
sso_rev_090583 |
NC_002754.1 |
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chr1:2264563-2264622 |
chr1 |
2264563 |
2264622 |
CTTCCAGCTCATAAACAAGGTTATAGAATTGAGGAAGTACCAGATCCTAAACCGGGTAAG |
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| 7 |
sso_fwd_077697 |
NC_002754.1 |
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chr1:1942401-1942460 |
chr1 |
1942401 |
1942460 |
TGGAGAAATTTATAATAATAAGGATATAAAAGACGGCGGACTGATAGCTCTAATAGGCTT |
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| 8 |
sso_rev_046497 |
NC_002754.1 |
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chr1:1162413-1162472 |
chr1 |
1162413 |
1162472 |
TGGGGCAGAAGTTGCTATTTGATGAAAGGCCTAAAGAAAACAGAGAAGACTTGTTTGATA |
|
| 9 |
sso_rev_091790 |
NC_002754.1 |
SSO2526 |
chr1:2294738-2294797 |
chr1 |
2294738 |
2294797 |
GACAATTATATCTCCATCAGAGGGTGGTCTCAGCCTATTGATTACCATATTATTAACCCT |
|
| 10 |
sso_fwd_033235 |
NC_002754.1 |
SSO0971 |
chr1:830851-830910 |
chr1 |
830851 |
830910 |
CAGTACCTATAAACTTTATCGTAGCTCCAGTAGCAACTACTGCTGATAATGCCCCACCTC |
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| 11 |
sso_rev_031735 |
NC_002754.1 |
SSO0934 |
chr1:793363-793422 |
chr1 |
793363 |
793422 |
AATGGAATTATAGAGGAAGGCTCTATTCGATATAATGAGAGAGGGAATTGCGGATTACAC |
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| 12 |
sso_rev_082038 |
NC_002754.1 |
SSO2232 |
chr1:2050938-2050997 |
chr1 |
2050938 |
2050997 |
CATTTGCAAGTTCTTCTATTACCGGAGCCAGTATTAAGCATGGCGCACACCATTCTGCCC |
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| 13 |
sso_rev_080637 |
NC_002754.1 |
SSO2192 |
chr1:2015913-2015972 |
chr1 |
2015913 |
2015972 |
TACGAACCTTGACTTAGCTACTAAGTGATTTAGCTCGAAGCCATATCTTAGACTCCCATA |
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| 14 |
sso_rev_021699 |
NC_002754.1 |
SSO0627 |
chr1:542463-542522 |
chr1 |
542463 |
542522 |
ATAACATACCTTGGCTCTCAAAACCTCTTATCACTCTAGGCTTTAAATTGGCTATAACTA |
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| 15 |
sso_fwd_097989 |
NC_002754.1 |
SSO2694 |
chr1:2449701-2449760 |
chr1 |
2449701 |
2449760 |
ATAGGGTATATTTATATTTAAGGACGATATTACTATACCAATTACTAAAATAGAGAAGAA |
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| 16 |
sso_rev_090112 |
NC_002754.1 |
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chr1:2252788-2252847 |
chr1 |
2252788 |
2252847 |
ATGGATTAACACTGCAGCTGCTGGCACTCCTAGCGGATTTCTAGAAACCGGCAAAGAATT |
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| 17 |
sso_fwd_046981 |
NC_002754.1 |
SSO1336 |
chr1:1174501-1174560 |
chr1 |
1174501 |
1174560 |
TGTATACTCCTCCAAACAGTCCTAGAAATCTTCCTCGAAAGAGAGTCATTAGCGTCTACA |
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| 18 |
sso_fwd_075059 |
NC_002754.1 |
SSO2058 |
chr1:1876451-1876510 |
chr1 |
1876451 |
1876510 |
CTATTGATCCCTTGTATTTATTTAAAAAATCCACATAAGTTCCTCCCTTAAACCTATCTA |
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| 19 |
sso_fwd_024268 |
NC_002754.1 |
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chr1:606676-606735 |
chr1 |
606676 |
606735 |
CATGCGTCTAAAGTGATGATAACTAAGCTAGATCTGAGTGATCCAAGAAGACGGGAAAAG |
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| 20 |
sso_rev_055354 |
NC_002754.1 |
SSO1532 |
chr1:1383838-1383897 |
chr1 |
1383838 |
1383897 |
CACTAAATCGCTATCTAAATTTACGTTATAAAGTCAAGCTCTATACCTCTCTCTTCAAGA |
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Total number of rows: 243504
Table truncated, full table size 33058 Kbytes.
| Supplementary data files not provided |
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