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Platform GPL13322 Query DataSets for GPL13322
Status Public on Mar 31, 2014
Title CRIBI Pig 2K miRNA array
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Sus scrofa
Manufacturer CRIBI biotechnology centre http://microcribi.cribi.unipd.it
Manufacture protocol 2K Combimatrix microarray were synthesized using the Combimatrix synthesizer (Combimatrix) that allows in-situ synthesis of oligonucleotide probes through the phosphoramidites chemistry.
 
 
Submission date Mar 23, 2011
Last update date Mar 31, 2014
Contact name Gerolamo Lanfranchi
E-mail(s) [email protected]
Phone +39-0498276219
Organization name University of Padova
Department CRIBI - Biotechnology Center and Biology Department
Lab Functional Genomics Lab
Street address Via U. Bassi, 58/B
City Padova
ZIP/Postal code 35131
Country Italy
 
Samples (28) GSM697099, GSM697100, GSM697101, GSM697102, GSM697103, GSM697104 
Series (2)
GSE28140 Evaluation of miRNA expression in 14 different tissues by the RAKE technology
GSE28637 Discovering, evolution, biogenesis, expression and target prediction of porcine micro-RNAs: new regulatory gene expression network in different tissues.

Data table header descriptions
ID
Array # Number of the array
Feature # Number of the spot.
Column Number of the array column.
Row Number of the array row.
Probe # Number of the probe.
Name Probe name
SEQUENCE Probe sequence
Length Probe length

Data table
ID Array # Feature # Column Row Probe # Name SEQUENCE Length
1 1 1 1 1 43 ENSSSCT00000019703_18_16054348_16054429_+_3p TTTTTGGCTCCCCCAAGAACACTGATTTGTGCTCGCTCTA 40
2 1 2 2 1 44 ENSSSCT00000019703_18_16054348_16054429_+_3p_-4_bg TTTTTATTTCAAATGGTGCTAGACAATCGTGCTCGCTCTA 40
3 1 3 3 1 45 ENSSSCT00000019711_15_73700020_73700104_-_5p TTTTTACTCCACCCCCAGAATTCTAGATGTGCTCGCTCTA 40
4 1 4 4 1 46 ENSSSCT00000019711_15_73700020_73700104_-_5p_16_bg TTTTTCAGAATTCTAGATGCATTGGGGTGTGCTCGCTCTA 40
5 1 5 5 1 47 ENSSSCT00000019754_13_101111622_101111699_-_5p TTTTTTGGAGACAGAAAACCCCACCCTCGTGCTCGCTCTA 40
6 1 6 6 1 48 ENSSSCT00000019754_13_101111622_101111699_-_5p_-5_bg TTTTTACCCTATTCCAGGATTGGAGACAGTGCTCGCTCTA 40
7 1 7 7 1 49 ENSSSCT00000019778_17_61782653_61782764_-_3p TTTTTGAGGAGTTCCCGGACCGCATCCTGTGCTCGCTCTA 40
8 1 8 8 1 50 ENSSSCT00000019778_17_61782653_61782764_-_3p_16_bg TTTTTCTGCTCATGGGCAAGATCCGCGAGTGCTCGCTCTA 40
9 1 9 9 1 51 ENSSSCT00000019822_1_147227351_147227497_-_3p_4 TTTTTTGGCACCCAGTTGGAGCGGAAGTGTGCTCGCTCTA 40
10 1 10 10 1 52 ENSSSCT00000019822_1_147227351_147227497_-_3p_4_bg TTTTTCAGTTGGAGCGGAAGTTCAAATAGTGCTCGCTCTA 40
11 1 11 11 1 53 ENSSSCT00000019822_1_147227351_147227497_-_3p_5 TTTTTGGCACCCAGTTGGAGCGGAAGTTGTGCTCGCTCTA 40
12 1 12 12 1 54 ENSSSCT00000019822_1_147227351_147227497_-_3p_5_bg TTTTTCAGTTGGAGCGGAAGTTCAAATAGTGCTCGCTCTA 40
13 1 13 13 1 55 ENSSSCT00000019919_9_47573177_47573238_-_5p;eca-mir-125b_9_47573164_47573252_-_5p;eca-mir-125b_9_47654244_47654332_-_5p TTTTTCACAAGTTAGGGTCTCAGGGACTGTGCTCGCTCTA 40
14 1 14 14 1 56 ENSSSCT00000019919_9_47573177_47573238_-_5p_-2_bg;eca-mir-125b_9_47654244_47654332_-_5p_12_bg;eca-mir-125b_9_47573164_47573252_-_5p_12_bg TTTTTTAAACGGTAAACATCACAAGTTAGTGCTCGCTCTA 40
15 1 15 15 1 57 ENSSSCT00000019942_13_26180000_26180077_-_5p TTTTTGTTCCCTGAGGAGAAACTCAAGTGTGCTCGCTCTA 40
16 1 16 16 1 58 ENSSSCT00000019942_13_26180000_26180077_-_5p_6_bg TTTTTCCCTGAGGAGAAACTCAAGTCAAGTGCTCGCTCTA 40
17 1 17 17 1 59 ENSSSCT00000019954_X_58683803_58683888_+_3p TTTTTGGCGCCCAATTAATGTCTGTTGAGTGCTCGCTCTA 40
18 1 18 18 1 60 ENSSSCT00000019954_X_58683803_58683888_+_3p_14_bg TTTTTAGCAGGCGCCCAATTAATGTCTGGTGCTCGCTCTA 40
19 1 19 19 1 61 ENSSSCT00000019965_14_69493245_69493336_-_3p;hsa-mir-1296_14_69493245_69493337_-_3p TTTTTAGGGTCAAAACCCCACTCCCCACGTGCTCGCTCTA 40
20 1 20 20 1 62 ENSSSCT00000019965_14_69493245_69493336_-_3p_16_bg;hsa-mir-1296_14_69493245_69493337_-_3p_16_bg TTTTTCAGCCCAGCTGGGTTAGGGTCAAGTGCTCGCTCTA 40

Total number of rows: 2240

Table truncated, full table size 265 Kbytes.




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Supplementary data files not provided
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