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Platform GPL13509 Query DataSets for GPL13509
Status Public on May 10, 2011
Title Capital Bio mouse 32K oligonucleotide microarray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Capital Bio Corporation (Beijing, China)
Manufacture protocol See the manufacturer's web site.
 
 
Submission date May 09, 2011
Last update date May 10, 2011
Contact name Liuyan Zhang
E-mail(s) [email protected]
Organization name Institute of Psychology, Chinese Academy of Sciences
Street address 4A Dutun Rd., Chaoyang District
City Beijing
ZIP/Postal code 100101
Country China
 
Samples (11) GSM721563, GSM721564, GSM721565, GSM926628, GSM926629, GSM1567086 
Series (3)
GSE28834 Global gene expression analysis of embryos with spina bifida after maternal exposure to retinoic acid
GSE37739 CD8+ T cells: IL-10+ VS IL-10-
GSE64255 Mouse livers: control vs miR-155 transgenic mice

Data table header descriptions
ID
Block Block
Row Row
Column Column
Identifier Identfier
Name Name
ORF Open reading frame
Oligo_Id Oligonucleotide identifier
RANGE_GB RefSeq chromosome accession.version (UCSC mm8, NCBI Build 36)
RANGE_START Start coordinate relative to RANGE_GB
RANGE_END End coordinate relative to RANGE_GB
Chromosomal_Location Chromosomal location (chr:start..end) based on mm8, NCBI Build 36
Gene_Id Gene Identifier
Transcript_Id Transcript identifier
SEQUENCE Sequence of oligonucleotide
Oligo_Exon_or_Transcript Oligonucleotide exon or transcript
Oligo_Type Oligonucleotide type
Gene_Symbol Gene symbol
Description Description
SPOT_ID

Data table
ID Block Row Column Identifier Name ORF Oligo_Id RANGE_GB RANGE_START RANGE_END Chromosomal_Location Gene_Id Transcript_Id SEQUENCE Oligo_Exon_or_Transcript Oligo_Type Gene_Symbol Description SPOT_ID
1 1 1 1 M-ACTB M-ACTB housekeeping gene,positive control control
2 1 1 2 M-GAPD M-GAPD housekeeping gene,positive control control
3 1 1 3 M-LDHA M-LDHA housekeeping gene,positive control control
4 1 1 4 M-RPL5 M-RPL5 housekeeping gene,positive control control
5 1 1 5 Hex Hex spot and immobilization positive control control
6 1 1 6 50%DMSO 50%DMSO hybridization negative control,spot solution control
7 1 1 7 Y1 Y1 Yeast intergenic sequence 1, spike RNA --spike RNA
8 1 1 8 Y2 Y2 Yeast intergenic sequence 2, spike RNA --spike RNA
9 1 1 9 Y3 Y3 Yeast intergenic sequence 3, spike RNA --spike RNA
10 1 1 10 Y4 Y4 Yeast intergenic sequence 4, spike RNA --spike RNA
11 1 1 11 Y5 Y5 Yeast intergenic sequence 5, spike RNA --spike RNA
12 1 1 12 Y6 Y6 Yeast intergenic sequence 6, spike RNA --spike RNA
13 1 1 13 Y7 Y7 Yeast intergenic sequence 7, spike RNA --spike RNA
14 1 1 14 Y8 Y8 Yeast intergenic sequence 8, spike RNA --spike RNA
15 1 1 15 102 Hint1 Hint1 M200000158 NC_000077.4 54709816 54713914 11:54709816-54713914 ENSMUSG00000020267 ENSMUST00000020504 GAAATCCCCGCCAAGATCATCTTCGAGGACGACCGGTGTCTTGCTTTTCATGACATTTCCCCTCAAGCA T CI Hint1 histidine triad nucleotide binding protein 1 [Source:MarkerSymbol;Acc:MGI:1321133]
16 1 1 16 108 Tcf1 Tcf1 M200000168 NC_000071.4 115209360 115232037 5:115209360-115232037 ENSMUSG00000029556 ENSMUST00000031535 ACCTGTGGTTTTTATATAAGATGCCCCCTTAACATTCGGCACAGAGGAGGTGGCTCAGTGGCCCAATAT E CI Tcf1 transcription factor 1 [Source:MarkerSymbol;Acc:MGI:98504]
17 1 1 17 126 Smcp Smcp M200000197 NC_000069.4 92669275 92674397 3:92669275-92674397 ENSMUSG00000074435 ENSMUST00000098888 ACCACAGTCCCCACCAGGTGCTCAAGGCAACTGGAACCAGAAGAAGTCAAACAAATAGACTGTCCCTGA E CI Smcp sperm mitochondria-associated cysteine-rich protein [Source:MarkerSymbol;Acc:MGI:96945]
18 1 1 18 132 Ptpra Ptpra M200000206 NC_000068.5 130141723 130245741 2:130141723-130245741 ENSMUSG00000027303 ENSMUST00000077303;ENSMUST00000028769 TCCTGGAACGTGTGAAAGCAGAAGGAATTTTAGATGTCTTCCAAACTGTCAAGAGCCTGCGGCTGCAGA E;E C Ptpra protein tyrosine phosphatase, receptor type, A [Source:MarkerSymbol;Acc:MGI:97808]
19 1 1 19 150 Rom1 Rom1 M200000239 NC_000085.4 8994443 8996401 19:8994443-8996401 ENSMUSG00000071648 ENSMUST00000096242 TTACAATTCGTTACTCAGACTCAGGGAAGGAAAGGTCCCTGGGGTTATAGGAGTTAAGAGCAAGCGGAG E CI Rom1 rod outer segment membrane protein 1 [Source:MarkerSymbol;Acc:MGI:97998]
20 1 1 20 156 S100a3 S100a3 M200000250 NC_000069.4 90672879 90688629 3:90672879-90688629 ENSMUSG00000001021 ENSMUST00000079456;ENSMUST00000001047 ACACCCTTCCCACTCTCTCTGTGGTACCCCTTTCAATCTAGACTTGCCAAGTTCTTGATGTGCTAACCC E;E C S100a3 S100 calcium binding protein A3 [Source:MarkerSymbol;Acc:MGI:1338849]

Total number of rows: 33696

Table truncated, full table size 8682 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL13509_mouseV4_32K_output-080620_4x12pin_zhl.gal.gz 275.2 Kb (ftp)(http) GAL

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