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Platform GPL14849 Query DataSets for GPL14849
Status Public on Nov 09, 2011
Title NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 10451]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on UCSC Mus musculus 8, Feb 2006
Genomic regions bound by Hoxa9/Meis1 in hematopoietic cells, isothermal tiling oligos at 100bp

DESIGN_ID : 10451
native array description file:090807_UM_MM8_regions_ChIP.ndf
native array description file:090807_UM_MM8_regions_ChIP.pos
 
Submission date Nov 07, 2011
Last update date Nov 09, 2011
Contact name Yongsheng Huang
E-mail(s) [email protected]
Phone 5016583547
Organization name University of Michigan
Department Bioinformatics
Street address 100 Washtenaw Ave
City Ann Arbor
State/province MI
ZIP/Postal code 48105
Country USA
 
Samples (6) GSM829654, GSM829655, GSM829656, GSM829657, GSM829658, GSM829659
Series (2)
GSE33517 Epigenetic profiling of histone H3K4me1, H3K4me3, H3K27me3, H3ac, H4ac, CBP and P300 using ChIP-chip
GSE33518 Identification and characterization of Hoxa9 binding sites in hematopoietic cells

Data table header descriptions
ID PROBE_DESIGN_ID
SEQ_ID The NimbleGen sequence identifier
X X coordinate of probe on chip
Y Y coordinate of probe on chip
SEQUENCE Probe sequence
PROBE_ID PROBE_ID in NimbleGen
CHROMOSOME
RANGE_GB
POSITION Position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end (MM8; NCBI Build 36)
LENGTH
GC

Data table
ID SEQ_ID X Y SEQUENCE PROBE_ID CHROMOSOME RANGE_GB POSITION LENGTH GC
10451_0762_0376 chr1:13651984-13654983 762 376 TGGATTTATTTCTTGTGTAATTCAGTTCAGAAAATCCTTACCTCTGCTTAAATCTTGA CHR01FS013651988 chr1 NC_000067.4 13651988 58 0.31
10451_0196_0626 chr1:13651984-13654983 196 626 AAAATCCTTACCTCTGCTTAAATCTTGAAGTGTATTATATATGATTTCCTCTAGCAGG CHR01FS013652018 chr1 NC_000067.4 13652018 58 0.33
10451_0530_0494 chr1:13651984-13654983 530 494 TGTATTATATATGATTTCCTCTAGCAGGTTAAAGGTTTCAAGTCTTATATTAAGATCT CHR01FS013652048 chr1 NC_000067.4 13652048 58 0.28
10451_0420_0410 chr1:13651984-13654983 420 410 TTTCAAGTCTTATATTAAGATCTTTAATCTACTTTTAATTAACTTTAGTGCAGAG CHR01FS013652083 chr1 NC_000067.4 13652083 55 0.24
10451_0101_0123 chr1:13651984-13654983 101 123 ACTTTTAATTAACTTTAGTGCAGAGTGAAAAATATGGGTCTAGCTTTTGAATGAA CHR01FS013652113 chr1 NC_000067.4 13652113 55 0.29
10451_0507_0853 chr1:13651984-13654983 507 853 AAGGACATGGCTGCTTCTAGGTATGGTAGAGGAGAAAGTTTATCATAGATATGTGATAGCATAA CHR01FS013652188 chr1 NC_000067.4 13652188 64 0.38
10451_0352_0118 chr1:13651984-13654983 352 118 GGAGAAAGTTTATCATAGATATGTGATAGCATAACCACAGGCAGACCAGAATGGACT CHR01FS013652218 chr1 NC_000067.4 13652218 57 0.4
10451_0114_0908 chr1:13651984-13654983 114 908 ATAACCACAGGCAGACCAGAATGGACTCGATCAGACTGACTGGGCCATGT CHR01FS013652248 chr1 NC_000067.4 13652248 50 0.52
10451_0587_0847 chr1:13651984-13654983 587 847 AGAGGGGAGAGAGGAGAGCCAGCTGCAGCAGTCAGAAGGCCAAAAGTACA CHR01FS013652333 chr1 NC_000067.4 13652333 50 0.56
10451_0592_0026 chr1:13651984-13654983 592 26 AGAAGGCCAAAAGTACAAAAGAGGGCAGGTAACCAAAATGGCTGGGATTT CHR01FS013652366 chr1 NC_000067.4 13652366 50 0.44
10451_0082_0254 chr1:13651984-13654983 82 254 TGTGTGTGTAGGAGCCTCTGGGGGAAGGGCAGCCCAGTCCTTGGTCTGGA CHR01FS013652443 chr1 NC_000067.4 13652443 50 0.62
10451_0435_0395 chr1:13651984-13654983 435 395 CCAGTCCTTGGTCTGGAATGTTCAGGGCAGAGAGCAAGATATGTATGCTA CHR01FS013652476 chr1 NC_000067.4 13652476 50 0.48
10451_0659_0377 chr1:13651984-13654983 659 377 AGAGCAAGATATGTATGCTAGCCATACCCTGTAATTGATTGGGACTAAGGG CHR01FS013652506 chr1 NC_000067.4 13652506 51 0.43
10451_0171_0259 chr1:13651984-13654983 171 259 AATTGATTGGGACTAAGGGGGACTAGGTCAAATAGGCACCTCAGCTGTTT CHR01FS013652538 chr1 NC_000067.4 13652538 50 0.46
10451_0449_0003 chr1:13651984-13654983 449 3 AATAGGCACCTCAGCTGTTTGTCTCAGAGTTCCAGAGTTGATAAATTAATAGTTTCATCCA CHR01FS013652568 chr1 NC_000067.4 13652568 61 0.38
10451_0660_0988 chr1:13651984-13654983 660 988 AGTTGATAAATTAATAGTTTCATCCATCTACTTGTGGAAAACCAATTTTCTCAGCAC CHR01FS013652603 chr1 NC_000067.4 13652603 57 0.32
10451_0197_0403 chr1:13651984-13654983 197 403 CTTGTGGAAAACCAATTTTCTCAGCACCATTTTTTCCCCCAAGACAGAGTTTC CHR01FS013652633 chr1 NC_000067.4 13652633 53 0.42
10451_0729_0079 chr1:13651984-13654983 729 79 AGAGTTTCTCTGTAGTTCTAACTGTCCTTGTGCCTCACTCTGTGGACCAG CHR01FS013652678 chr1 NC_000067.4 13652678 50 0.48
10451_0533_0749 chr1:13651984-13654983 533 749 CTGGGATTAGAGGTGTTATACCACCAATGCCTGGCTCAGCATCATTGTTA CHR01FS013652773 chr1 NC_000067.4 13652773 50 0.46
10451_0577_0983 chr1:13651984-13654983 577 983 CTGGCTCAGCATCATTGTTAAAGAGACTGTCTTTTCTCCAAGTTATGTTATGTGCAAATTTA CHR01FS013652803 chr1 NC_000067.4 13652803 62 0.35

Total number of rows: 383370

Table truncated, full table size 57317 Kbytes.




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Supplementary file Size Download File type/resource
GPL14849_090807_UM_MM8_regions_ChIP.ndf.gz 25.3 Mb (ftp)(http) NDF
GPL14849_090807_UM_MM8_regions_ChIP.pos.gz 3.0 Mb (ftp)(http) POS

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