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Platform GPL15613 Query DataSets for GPL15613
Status Public on May 06, 2013
Title NimbleGen Tribolium castaneum Whole-genome Tiling Array Set (2 of 3)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Tribolium castaneum
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description This is a Red flour beetle (Tribolium castaneum) whole-genome tiling array set (2 of 3) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen.
 
Contributor(s) Colbourne J, Choi J
Submission date May 25, 2012
Last update date May 06, 2013
Contact name Jacqueline Lopez
E-mail(s) [email protected]
Phone 574-631-1902
Organization name University of Notre Dame
Department Biology
Lab Pfrender Laboratory
Street address 019 Galvin Life Science Center
City Notre Dame
State/province Indiana
ZIP/Postal code 46556
Country USA
 
Samples (3) GSM937324, GSM937325, GSM937326
Series (1)
GSE38245 Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

Data table header descriptions
ID
GENOME_ACC GenBank accession
PROBE_DESIGN_ID
SEQUENCE
RANGE_START
LENGTH
RANGE_END

Data table
ID GENOME_ACC PROBE_DESIGN_ID SEQUENCE RANGE_START LENGTH RANGE_END
CM000276FS000001655 CM000276 540731_721_3933 TAACCGCGCCATTTTTTTTAGTTCGTAATGGTTGACATCACGTATTCACAAACC 1655 54 1708
CM000276FS000001965 CM000276 540751_724_1126 CAGACGAAGAACGCCTTTGAAATCCTCCGAATCCTGCAGGCCCGCCGCAA 1965 50 2014
CM000276FS000001980 CM000276 540741_497_1695 TTTGAAATCCTCCGAATCCTGCAGGCCCGCCGCAACCAGGCCGTAATAAA 1980 50 2029
CM000276FS000002230 CM000276 540751_747_623 TGTTGGGCAACCCTTGAAGGTGGAAGCAAAACATGTGATAAGAATTTCTAAGAAACA 2230 57 2286
CM000276FS000002365 CM000276 540741_1028_2190 AAAAAAAAAATTTAACATTTATTCATATTACACGATACCACGATTAACAGAC 2365 52 2416
CM000276FS000002460 CM000276 540731_536_4130 GGATTGACTCTATTTGTCAATGTAAATAAAAAATTTAGATAAAGCGTCTAAAAA 2460 54 2513
CM000276FS000003116 CM000276 540731_893_4007 CTGTTCCATCGAAAACAAATGGTCTCGTGGCACAGTGCAGATACCACCAG 3116 50 3165
CM000276FS000003261 CM000276 540751_786_630 CACTGATCTAATTATGATTCTTGGGTGACCTGAACAATTCTCTTAAATAAACAGGCAATGA 3261 61 3321
CM000276FS000003276 CM000276 540751_682_1394 GATTCTTGGGTGACCTGAACAATTCTCTTAAATAAACAGGCAATGATTAATTTCCT 3276 56 3331
CM000276FS000003311 CM000276 540741_45_2733 ACAGGCAATGATTAATTTCCTTTTCCGACCATTTTTTTATTCTTTTTATT 3311 50 3360
CM000276FS000006659 CM000276 540751_724_1322 ATTTGCACCGTTTACGAGGGCGCCTCAAAAATTTCACTGTCCGCCACTAA 6659 50 6708
CM000276FS000007068 CM000276 540751_178_188 ATTGTCCTGCAAGCCACTTGTACACCACAAAGTTATGATTTCAATCATTTTTAAAAC 7068 57 7124
CM000276FS000007433 CM000276 540751_228_808 CACGTAATAAATATGCTTATTCCTGACTCAACATTTTAACGACTCGTTTTAAAT 7433 54 7486
CM000276FS000007453 CM000276 540741_914_1656 TCCTGACTCAACATTTTAACGACTCGTTTTAAATTAAACCATTTTTTAGG 7453 50 7502
CM000276FS000007612 CM000276 540751_282_186 GCAAAATCTTTCTCTTCTTCTCCAAATCATCCCTTAACTGATTTCCCTCCAAATGTA 7612 57 7668
CM000276FS000008388 CM000276 540741_678_1484 AAAATGACTTACCTCGCTTTATCAGCGTGGTAACTCACTTTATTTCGCAAAATT 8388 54 8441
CM000276FS000008433 CM000276 540741_717_1853 CGCAAAATTTAGTTAACACAGACCAAAAATGTTCTATCTATGACAAAAATTAAG 8433 54 8486
CM000276FS000008478 CM000276 540751_1004_622 AAAATTAAGTTATTTATTATTTACACAGCACACAGTTCAAAATGATACTTTTGCT 8478 55 8532
CM000276FS000008503 CM000276 540741_441_2331 CAGCACACAGTTCAAAATGATACTTTTGCTTTTCGAGCGTTTTAGCAGATTTCCACTTA 8503 59 8561
CM000276FS000008598 CM000276 540751_93_1287 TGACGTTATTTTGGCCTTTTTGGTTAGATTTGCTTTGTTTTTGGACGAGAAC 8598 52 8649

Total number of rows: 2123031

Table truncated, full table size 247865 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1.gff.gz 271.6 Kb (ftp)(http) GFF
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1.ncd.gz 272 b (ftp)(http) NCD
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1.ndf.gz 122.0 Mb (ftp)(http) NDF
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1.pos.gz 16.9 Mb (ftp)(http) POS
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1.txt.gz 63.5 Mb (ftp)(http) TXT
GPL15613_101013_Tcas_CGH_ZL_2_of_3_HX1_probe_locations.gff.gz 21.9 Mb (ftp)(http) GFF
GPL15613_CM000276-285_gbk.txt.gz 60.8 Mb (ftp)(http) TXT
GPL15613_DS497665-497969_gbk.txt.gz 8.0 Mb (ftp)(http) TXT

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