NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL15788 Query DataSets for GPL15788
Status Public on Feb 06, 2013
Title NimbleGen Bacteroides fragilis 638R custom array [091125_Bfra_CJS_exp]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bacteroides fragilis 638R
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer technology per manufacturer website .
 
Description 091125_Bfra_CJS_exp Custom expression order for Bacteroides fragilis (FQ_312004).
Each probe will be replicated 8 times on the chip. Probes are randomly distributed over the surface of the array.
Picked 11 probes per gene for all 4341 cds regions (12 SEQ_IDs were duplicates). 8 replicates on final array
Design_ID: 10998
native array description file: 091125_Bfra_CJS_exp.ndf
native array description file: 091125_Bfra_CJS_exp.ngd
 
Submission date Jul 10, 2012
Last update date Feb 06, 2013
Contact name Charles Jeffrey Smith
E-mail(s) [email protected]
Phone 252-744-2700
Fax 252-744-3104
Organization name East Carolina University
Department Microbiology & Immunology
Street address 600 Moye Blvd.
City Greenville
State/province NC
ZIP/Postal code 27834
Country USA
 
Samples (42) GSM958419, GSM958420, GSM958421, GSM958422, GSM958423, GSM958424 
Series (5)
GSE39231 Role of the Bacteroides fragilis EcfO regulon during oxidative stress.
GSE53883 Bacteroides fragilis in vivo gene expression
GSE73107 Cis-encoded sRNAs repress expression of polysaccharide utilization loci in Bacteroides fragilis 638R

Data table header descriptions
ID SEQ_ID
ORF Gene_name is the locus_tag from accession FQ312004
Function Function is the geneproduct description from accession FQ312004
SEQUENCE

Data table
ID ORF Function SEQUENCE
BF638000000000001 BF638R_0001 putative SpoU rRNA methylase family protein GAATGTATTTATCTGTGTGGAATTACGGCTACTCCTCCCCATCCCGAGATGCATAAGACA
BF638000000000002 BF638R_0002 putative outer membrane protein CAAGGGAAGTGACATTAGATGAAGTGATAAACAGACTATCTCTGGAATCATCATCGGCTA
BF638000000000003 BF638R_0003 hypothetical protein CAATAATCAAACATTTTGAAAACATTGACAAGCAGCCGGATAAGCTGTTAGTTTCATATA
BF638000000000004 BF638R_0004 putative sugar transferase ATTCTTTAGGAAAGTATATGGCTCGCATGGATGGAGATGATATAATGCATATCGATAGAC
BF638000000000005 BF638R_0005 hypothetical protein TGATTATGTCACCTCGATCTCCTCTACAGGGTGGGACAGATTTCTCTCCGAAGCTGTAGG
BF638000000000006 BF638R_0006 conserved hypothetical exported protein GAGTGGGATTAGTGAATGCAGGGAGGTCACTTCCGTGGACACGTTTCGGTTGTCTGCTGC
BF638000000000007 BF638R_0007 conserved hypothetical protein ACTGCAGGAAATGCCCCTCGAACAATCATTTGCTTACAATAGGTTTATACAAGATGACAA
BF638000000000008 BF638R_0008 putative glycosyltransferase TTGTTTCACGCTCTAAGCAGAAAGCATCATGTAAAAGTGATTGGACAGAATACCCTTCTT
BF638000000000009 BF638R_0009 putative glycosyltransferase AGGTGTCGGAGGATTTGGCACAGCGGTACCAGTGGACACAAATCGCTATTGGATGGATTG
BF638000000000010 BF638R_0010 putative exported protein TCTGGAAAGAGCATTATTTGCAATATGCGCCTGTAGAAGGGGAGTTAGAATATCTTGGTT
BF638000000000011 BF638R_0011 putative ABC transporter ATP-binding protein TCAATAAGCGTGTTCTTGCCATAACCAATGCTCAAAATCTGGGTGCCCAATTTATAGAAA
BF638000000000012 BF638R_0012 conserved hypothetical exported protein TGGATACCTGGTACCTATGTGTGTGTATAATGGTGATACAATCCCGGCTTTCCAGATTCC
BF638000000000013 BF638R_0013 conserved hypothetical exported protein CTGACGCAGACGGCTGGATGGAAACTTCCCTGGTTGCCTCTGACAGCAGAATTGCAAGGT
BF638000000000014 BF638R_0014 putative SAM superfamily protein TGCATTTATTGTGAATGTGGTTACAATGGTGAACATCGTCCTAAATCTTCATTACCGACC
BF638000000000015 BF638R_0015 conserved hypothetical protein AGAAAACTTTCTGGATCCGTCTGTGTATGAACAATGGTATACTACACATGGAGGTTTGCA
BF638000000000016 BF638R_0016 putative arylsulfatase precursor TGAACATCGTCCGGGATACAGAGGACAGATATCGGACCGGTATCCTACAATCGCAGAGGT
BF638000000000017 BF638R_0017 conserved hypothetical iron transport-related transmembrane protein AGTCCTTTGATGATCGTGATGAAGCTTCATCGGTGGCTTATGGATGATACCCGTACGACA
BF638000000000018 BF638R_0018 putative iron transport receptor protein GAAGAGAATCTGTACGACATGCCACACAACAAATTCCTAGGATTCAAAAACGATAATGTA
BF638000000000019 BF638R_0019 putative sulfate permease transmembrane protein ATCATCCGCATGCGTAAAGTTCCATTCATCGATTCGACCGGTATTCACAACCTGACCAGC
BF638000000000020 BF638R_0020 putative rubrerythrin GAGCATGCAAAACGTATGTTTAAGTTCCTTGAAGGAGGTATGGTTGAAATCACTGCAAGC

Total number of rows: 4341

Table truncated, full table size 534 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15788_091125_Bfra_CJS_exp.ndf.gz 21.6 Mb (ftp)(http) NDF
GPL15788_091125_Bfra_CJS_exp.ngd.gz 107.2 Kb (ftp)(http) NGD

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap