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Status
Public on Jul 31, 2012
Title
Agilent-027432 Syn6803_expressions454_4-3probes
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Synechocystis sp. PCC 6803 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
4 probes per feature on chr except for internals; otherwise 3 probes per feature; done on 454 data with new annotation
Submission date
Jul 30, 2012
Last update date
Jan 23, 2017
Contact name
Jens Georg
E-mail(s)
[email protected] Organization name
University of Freiburg
Street address
Schänzlestr. 1
City
Freiburg
ZIP/Postal code
79104
Country
Germany
Samples (280)
GSM979518 , GSM979519 , GSM979520 , GSM979521 , GSM979522 , GSM979523
GSM979524 ,
GSM979525 ,
GSM979526 ,
GSM979527 ,
GSM979528 ,
GSM979529 ,
GSM1016707 ,
GSM1016708 ,
GSM1016709 ,
GSM1016710 ,
GSM1016711 ,
GSM1016712 ,
GSM1016713 ,
GSM1016714 ,
GSM1016715 ,
GSM1016716 ,
GSM1111628 ,
GSM1111629 ,
GSM1111630 ,
GSM1111631 ,
GSM1111632 ,
GSM1111633 ,
GSM1111634 ,
GSM1111635 ,
GSM1111636 ,
GSM1111637 ,
GSM1111638 ,
GSM1111639 ,
GSM1150965 ,
GSM1150966 ,
GSM1150967 ,
GSM1150968 ,
GSM1150969 ,
GSM1150970 ,
GSM1150971 ,
GSM1150972 ,
GSM1150973 ,
GSM1150974 ,
GSM1150975 ,
GSM1150976 ,
GSM1150977 ,
GSM1150978 ,
GSM1150979 ,
GSM1150980 ,
GSM1150981 ,
GSM1150982 ,
GSM1150983 ,
GSM1150984 ,
GSM1150985 ,
GSM1150986 ,
GSM1150987 ,
GSM1150988 ,
GSM1150989 ,
GSM1150990 ,
GSM1150991 ,
GSM1150992 ,
GSM1150993 ,
GSM1150994 ,
GSM1150995 ,
GSM1150996 ,
GSM1150997 ,
GSM1150998 ,
GSM1150999 ,
GSM1151000 ,
GSM1151001 ,
GSM1151002 ,
GSM1151003 ,
GSM1151004 ,
GSM1151005 ,
GSM1151006 ,
GSM1151007 ,
GSM1151008 ,
GSM1151009 ,
GSM1151010 ,
GSM1151011 ,
GSM1151012 ,
GSM1151013 ,
GSM1151014 ,
GSM1151015 ,
GSM1151016 ,
GSM1151017 ,
GSM1151018 ,
GSM1151019 ,
GSM1151020 ,
GSM1151021 ,
GSM1151022 ,
GSM1151023 ,
GSM1151024 ,
GSM1151025 ,
GSM1151026 ,
GSM1177699 ,
GSM1177700 ,
GSM1177701 ,
GSM1177702 ,
GSM1177703 ,
GSM1177704 ,
GSM1177705 ,
GSM1177706 ,
GSM1177707 ,
GSM1177708 ,
GSM1177709 ,
GSM1177710 ,
GSM1177711 ,
GSM1177712 ,
GSM1177713 ,
GSM1177714 ,
GSM1177715 ,
GSM1177716 ,
GSM1201667 ,
GSM1201668 ,
GSM1201669 ,
GSM1201670 ,
GSM1201671 ,
GSM1201672 ,
GSM1201673 ,
GSM1201674 ,
GSM1201675 ,
GSM1201676 ,
GSM1201677 ,
GSM1201678 ,
GSM1201679 ,
GSM1201680 ,
GSM1201681 ,
GSM1201682 ,
GSM1414242 ,
GSM1414243 ,
GSM1414244 ,
GSM1414245 ,
GSM1414246 ,
GSM1414247 ,
GSM1414248 ,
GSM1414249 ,
GSM1414250 ,
GSM1414251 ,
GSM1414252 ,
GSM1414253 ,
GSM1546519 ,
GSM1546520 ,
GSM1546521 ,
GSM1546522 ,
GSM1546523 ,
GSM1546524 ,
GSM1546525 ,
GSM1546526 ,
GSM1546527 ,
GSM1546528 ,
GSM1546529 ,
GSM1546530 ,
GSM1546531 ,
GSM1666288 ,
GSM1666289 ,
GSM1666290 ,
GSM1666291 ,
GSM1666292 ,
GSM1666293 ,
GSM1666294 ,
GSM1666295 ,
GSM1666296 ,
GSM1666297 ,
GSM1666298 ,
GSM1666299 ,
GSM1904325 ,
GSM1904326 ,
GSM1904327 ,
GSM1904328 ,
GSM1904329 ,
GSM1904330 ,
GSM1904331 ,
GSM1904332 ,
GSM2044521 ,
GSM2044522 ,
GSM2044523 ,
GSM2044524 ,
GSM2044525 ,
GSM2183799 ,
GSM2183800 ,
GSM2183801 ,
GSM2183802 ,
GSM2183803 ,
GSM2183804 ,
GSM2183805 ,
GSM2183806 ,
GSM2183807 ,
GSM2183808 ,
GSM2183809 ,
GSM2183810 ,
GSM2183811 ,
GSM2183812 ,
GSM2183813 ,
GSM2183814 ,
GSM2199106 ,
GSM2199107 ,
GSM2199108 ,
GSM2199109 ,
GSM2199110 ,
GSM2199111 ,
GSM2199112 ,
GSM2199113 ,
GSM2332694 ,
GSM2332695 ,
GSM2332696 ,
GSM2332697 ,
GSM2332698 ,
GSM2332699 ,
GSM2332700 ,
GSM2332701 ,
GSM2332702 ,
GSM2332703 ,
GSM2332704 ,
GSM2332705 ,
GSM2332706 ,
GSM2332707 ,
GSM2332708 ,
GSM2332709 ,
GSM2332710 ,
GSM2332711 ,
GSM2332712 ,
GSM2332713 ,
GSM2332714 ,
GSM2332715 ,
GSM2332716 ,
GSM2332717 ,
GSM2332718 ,
GSM2332719 ,
GSM2332720 ,
GSM2332721 ,
GSM2332722 ,
GSM2332723 ,
GSM2332724 ,
GSM2332725 ,
GSM2465128 ,
GSM2465129 ,
GSM2465130 ,
GSM2465131 ,
GSM2465132 ,
GSM2465133 ,
GSM2465134 ,
GSM2465135 ,
GSM2465136 ,
GSM2465137 ,
GSM2465138 ,
GSM2465139 ,
GSM2465140 ,
GSM2465141 ,
GSM2465142 ,
GSM2465143 ,
GSM2732445 ,
GSM2732446 ,
GSM2732447 ,
GSM2732448 ,
GSM3231172 ,
GSM3231173 ,
GSM3231174 ,
GSM3231175 ,
GSM3231176 ,
GSM3231177 ,
GSM3231178 ,
GSM3231179 ,
GSM5291714 ,
GSM5291715 ,
GSM5291716 ,
GSM5291717 ,
GSM5291718 ,
GSM5291719 ,
GSM5291720 ,
GSM5291721 ,
GSM5643823 ,
GSM5643824 ,
GSM5643825 ,
GSM5643826 ,
GSM5643827 ,
GSM5643828 ,
GSM5643829 ,
GSM5643830 Series (20)
GSE39804 Inference of pathways, non-coding RNAs and regulatory elements during iron deprivation of Synechocystis based on comprehensive expression profiling
GSE41411 The small RNA PsrR1 affects oligomerization of photosystem I by post-transcriptional repression of psaL in Synechocystis sp. PCC6803
GSE45667 How cyanobacteria pose new problems to old methods: Challenges in microarray time series analysis
GSE47482 A daily temporal program for rhythmic expression of protein-coding and non-coding genes in response to light and dark in Synechocystis sp. PCC 6803
GSE48415 The gene sml0013 of Synechocystis sp. strain PCC 6803 encodes for a novel subunit of the NDH1 complex that is ubiquitous distributed among cyanobacteria.
GSE48416 The hierarchy of transition metal homeostasis: Iron controls manganese accumulation in a unicellular cyanobacterium.
GSE49552 Transcriptomic response to long time ethanol production in the cyanobacterium Synechocystis sp. PCC6803
GSE58572 Deletion of the Synechocystis sp. PCC 6803 kaiAB1C1 gene cluster causes impaired cell growth under light-dark conditions
GSE63352 Integrated transcriptomic and metabolomic characterization of the low-carbon response using an ndhR mutant of Synechocystis sp. PCC 6803
GSE68250 Integrated functional analysis of engineered carbon limitation in the CO2/HCO3-uptake deficient ∆ndhD3/ndhD4/cmpA/sbtA mutant of Synechocystis sp. PCC 6803
GSE73840 The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7
GSE77118 Photomixotrophic growth protein A (PmgA) regulates carbohydrate metabolism through the non-coding RNA Ncr0700/PmgR1 in the cyanobacterium Synechocystis sp. PCC 6803
GSE82120 CyAbrB2 contributes to the transcriptional regulation of low CO2 acclimation in Synechocystis sp. PCC 6803
GSE83303 The FtsH3 protease is an epistatic master regulator of the iron and phosphate stress responses in the cyanobacterium Synechocystis sp. PCC 6803
GSE83387 6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803
GSE87496 Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1 in cyanobacteria
GSE102251 Ethylene production in Synechocystis sp. PCC 6803 promotes phototactic movement
GSE116409 The cyanobacterial phytochrome 2 regulates the expression of motility-related genes through the second messenger cyclic di-GMP
GSE174316 Integrative analysis of the salt stress response in cyanobacteria
GSE186330 Feedback regulation of RNase E during UV-stress response in cyanobacteria
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
ORF ORF Name
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING ORF CHROMOSOMAL_LOCATION SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
CUST_13195_PI424014020
CUST_13195_PI424014020
FALSE
slr0420
slr0420 unmapped
GGGAGCAAAGGGACGACGGAGTTGTTGGAAATAATTTTTAAAGCTATGTTTAGAGCCGTT
13
266
146
CUST_2032_PI423872883
CUST_2032_PI423872883
FALSE
slr0833-int2
slr0833 unmapped
CCTAGTTCCTCATCACTCATTAATTGTAAAGAGGAGCTTTCTAGTTTACGGGGTAGAGCA
14
266
144
CUST_10111_PI424014020
CUST_10111_PI424014020
FALSE
slr1636
slr1636 unmapped
ATGGTTAATGGATGCACTGTCGATATGTCGATAGAGGGGAGGGTCAATATTAGGTCAGTT
15
266
142
CUST_15747_PI424014020
CUST_15747_PI424014020
FALSE
sll0534
sll0534 unmapped
CAACATGGTATTGAGGCGATCCTTGATGTACAGGATTTCCCTGGCCTGAATTTCAATTTC
16
266
140
CUST_7_PI424014020
CUST_7_PI424014020
FALSE
slr0612
slr0612 unmapped
GATAACGAATGGGAGGATTTCTGGGGGGAAAATCTGGTTCAGTGATAATTTTGGCGATC
17
266
138
CUST_4539_PI424014020
CUST_4539_PI424014020
FALSE
ssl3719
ssl3719 unmapped
ATGGAATGATGGCGCCTCGTTTTCCTTTGGAAAAATCATATTCCCGTCTCAT
18
266
136
CUST_12913_PI424014020
CUST_12913_PI424014020
FALSE
slr0719
slr0719 unmapped
GGAAAAGGTCGCCATAGTCACAAAAATCAGCTTTTTTCTCAAGTCTAGGTTAATCGGGGC
19
266
134
CUST_2460_PI423872883
CUST_2460_PI423872883
FALSE
sll0446-int1
sll0446 unmapped
TACTGATAACTTTCCTGACCCGATCGTCGATTTTCCGCTTGGGCATTGGG
20
266
132
CUST_10671_PI424014020
CUST_10671_PI424014020
FALSE
slr0147
slr0147 unmapped
TTTTTTTCTGCCCCTAGGGATTCACAGGTGGTCTGTTCACAGTGGAGGTTTTC
45220 6044 Kbytes .Supplementary file Size Download File type/resource GPL15867_027432_D_GEO_20100225.txt.gz
1.5 Mb
(ftp) (http) TXT
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