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Platform GPL15942 Query DataSets for GPL15942
Status Public on Jan 01, 2013
Title Custom Salmonella LT2 and Tennessee Strain GE 4x44K (030869)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Tennessee
Manufacturer Agilent Technologies
Manufacture protocol Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited “on the fly.” This engineering feat is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies, resulting in consistent spot uniformity and traceability. In addition, multiple microarrays can be printed simultaneously in a single manufacturing run.
 
Description Agilent 60-mer SurePrint technology: a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted.
 
Submission date Aug 15, 2012
Last update date Jan 01, 2013
Contact name Haiping Li
Organization name Food and Drug Administration
Department CFSAN/OFS/Moffett Center
Street address 6502 S. Archer Rd
City Bedford Park
State/province IL
ZIP/Postal code 60501
Country USA
 
Samples (12) GSM986267, GSM986268, GSM986269, GSM986270, GSM986271, GSM986272 
Series (1)
GSE40146 Comparative Transcriptomic Analysis of Salmonella in Desiccation

Data table header descriptions
ID
SEQUENCE probe sequence
Description

Data table
ID SEQUENCE Description
CUST_12208_PI425529845 GTTTAAAAGCGTTGGTAAACTGGAACCTGGCGAACTGTATTATTTCGCGGGTATTGATGA (3R)-hydroxymyristoyl-ACP dehydratase
CUST_12209_PI425529845 CATACTCTGCAGATTGAAGAGATTTTAGAGCTTCTGCCGCACCGTTTTCCGTTTTTACTG (3R)-hydroxymyristoyl-ACP dehydratase
CUST_446_PI425529845 GTTTAAAAGCGTTGGTAAACTGGAACCTGGCGAACTGTATTATTTCGCGGGTATTGATGA (3R)-hydroxymyristoyl-ACP dehydratase[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
CUST_447_PI425529845 CATACTCTGCAGATTGAAGAGATTTTAGAGCTTCTGCCGCACCGTTTTCCGTTTTTACTG (3R)-hydroxymyristoyl-ACP dehydratase[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
CUST_11867_PI425529845 CTGTTTGTAGTCAAAGAAGATGCTTCATTTTTTTCCTATACCGACCGTTGGGCGCTGATC [citrate (Pro-3S)-lyase] ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_11868_PI425529845 CTATTTCCTCAAAGAAAAAGGGGTTGTGGACGACTGCCATTGCCAGATCGATCTG [citrate (Pro-3S)-lyase] ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_12742_PI425529845 GCAGAGCGTCATTAATCACTGTTATACCGAAATCGACCTGAAGATTTTCCGCCAGTATCT [citrate (pro-3S)-lyase] ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_12743_PI425529845 TGGTCAAAGAAGATACATCACGCTTTCCCTATGAAGACCGACTCGATCTGGTCCTTAAAG [citrate (pro-3S)-lyase] ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_8973_PI425529845 CTTACTTCGCGCGCGTCTTGCCTTTTATCTTTCTGATTTTAAATTGTTATTTCCGCAGCG [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_8974_PI425529845 GAGAATGTTTGCGGGTCAATTATCGCGAATGCGAACATTTAGGCGGTTTACCC [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191]
CUST_16318_PI425529845 CTCTGCTGGAAGGGAAATTTACCGTTAAGGAGGCCATCCAATGCTGGCAAAACGTATAA 1-(5-phosphoribosyl)-5-
CUST_16319_PI425529845 CAGATATCCGCAGATCGCCTTTCAATCCTCCGGCGGTATTGGCGATATCGATGATATTG 1-(5-phosphoribosyl)-5-
CUST_3983_PI425529845 CTGTTGGAAGGGAAATTTACCGTTAAGGAGGCCATCCAATGCTGGCAAAACGTATAA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
CUST_3984_PI425529845 CAGATATCCGCAGATCGCCTTTCAATCCTCCGGCGGTATTGGCGATATCGATGATATTG 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
CUST_14007_PI425529845 CTTGAACGTACCGTTAAAGGCGCGTTGTTAACCAACCTGTTATTTGTGATTGGGATACTC "1,4-dihydroxy-2-naphthoate octaprenyltransferase"
CUST_14008_PI425529845 TAACCTGCGCGATATTAATAGCGACAGAGAGAACGGTAAAAACACCCTTGTAGTACGACT "1,4-dihydroxy-2-naphthoate octaprenyltransferase"
CUST_11109_PI425529845 CGCTGATTTACTACTGGCCGAAAAATAAACCCGAAGCGCAGTTCCAGTTGATGAATATTT 16S ribosomal RNA m2G1207 methyltransferase
CUST_11110_PI425529845 GTATTCGCCAGCAACGTCTTTTCGGAAGTCAAAGGACGTTTTGACATGATCATCTCCAAC 16S ribosomal RNA m2G1207 methyltransferase
CUST_5930_PI425529845 GGAATTTACTATCCAGAAATCGATCGAACTGGGTGTAAGCCTCATTACGCCACTGTTCTC 16S ribosomal RNA methyltransferase RsmE[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
CUST_5931_PI425529845 GTTAAACTGGATAGTGAACGTCTGAACAAAAAGCGCCAGCAGTGGCAGAAGATCG 16S ribosomal RNA methyltransferase RsmE[Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

Total number of rows: 17381

Table truncated, full table size 2227 Kbytes.




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