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| Status |
Public on Aug 29, 2012 |
| Title |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [GENCODE v10] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site
|
| |
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| Description |
Custom metaprobest definition based on the GENCODE v10 annotation (July 2011).
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| |
|
| Submission date |
Aug 29, 2012 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Sridar V Chittur |
| E-mail(s) |
[email protected]
|
| Phone |
518-591-7215
|
| Organization name |
SUNY-University at Albany
|
| Department |
Center for Functional Genomics
|
| Lab |
Microarray Core
|
| Street address |
One Discovery Drive, CRC 342G
|
| City |
Rensselaer |
| State/province |
NY |
| ZIP/Postal code |
12144 |
| Country |
USA |
| |
|
| Samples (155)
|
GSM993449, GSM993450, GSM993451, GSM993452, GSM993453, GSM993454
GSM993455, GSM993456, GSM993457, GSM993458, GSM993459, GSM993460, GSM993461, GSM993462, GSM993463, GSM993464, GSM993465, GSM993466, GSM993467, GSM993468, GSM993469, GSM993470, GSM993471, GSM993472, GSM993473, GSM993474, GSM993475, GSM993476, GSM993477, GSM993478, GSM993479, GSM993480, GSM993481, GSM993482, GSM993483, GSM993484, GSM993485, GSM993486, GSM993487, GSM993488, GSM993489, GSM993490, GSM993491, GSM993492, GSM993493, GSM993494, GSM993495, GSM993496, GSM993497, GSM993498, GSM993499, GSM993500, GSM993501, GSM993502, GSM993503, GSM993504, GSM993505, GSM993506, GSM993507, GSM993508, GSM993509, GSM993510, GSM993511, GSM993512, GSM993513, GSM993514, GSM993515, GSM993516, GSM993517, GSM993518, GSM993519, GSM993520, GSM993521, GSM993522, GSM993523, GSM993524, GSM993525, GSM993526, GSM993527, GSM993528, GSM993529, GSM993530, GSM993531, GSM993532, GSM993533, GSM993534, GSM993535, GSM993536, GSM993537, GSM993538, GSM993539, GSM993540, GSM993541, GSM993542, GSM993543, GSM993544, GSM993545, GSM993546, GSM993547, GSM993548, GSM993549, GSM993550, GSM993551, GSM993552, GSM993553, GSM993554, GSM993555, GSM993556, GSM993557, GSM993558, GSM993559, GSM993560, GSM993561, GSM993562, GSM993563, GSM993564, GSM993565, GSM993566, GSM993567, GSM993568, GSM993569, GSM993570, GSM993571, GSM993572, GSM993573, GSM993574, GSM993575, GSM993576, GSM993577, GSM993578, GSM993579, GSM993580, GSM993581, GSM993582, GSM993583, GSM993584, GSM993585, GSM993586, GSM993587, GSM993588, GSM993589, GSM993590, GSM993591, GSM993592, GSM993593, GSM993594, GSM993595, GSM993596, GSM993597, GSM993598, GSM993599, GSM993600, GSM993601, GSM993602, GSM993603
|
| Series (1) |
| GSE15805 |
Duke-UNC-Texas-EBI ENCODE expression project |
|
| Relations |
| Alternative to |
GPL5175 |
| Data table header descriptions |
| ID |
Custom metaprobeset ID |
| SPOT_ID |
EnsEMBL_Gene_ID |
| External_Gene_ID |
|
| ORF |
HGNC_Symbol |
| Gene_Biotype |
|
| Chromosome |
|
| Start_Position |
|
| End_Position |
|
| Strand |
|
| Data table |
| ID |
SPOT_ID |
External_Gene_ID |
ORF |
Gene_Biotype |
Chromosome |
Start_Position |
End_Position |
Strand |
| 39505 |
ENSG00000240361 |
OR4G11P |
OR4G11P |
pseudogene |
1 |
62948 |
63887 |
1 |
| 30431 |
ENSG00000228463 |
AP006222.2 |
|
processed_transcript |
1 |
227615 |
267253 |
-1 |
| 35672 |
ENSG00000235373 |
RP11-206L10.3 |
|
lincRNA |
1 |
677193 |
685396 |
-1 |
| 30330 |
ENSG00000228327 |
RP11-206L10.2 |
|
lincRNA |
1 |
700237 |
714006 |
-1 |
| 37261 |
ENSG00000237491 |
RP11-206L10.6 |
|
lincRNA |
1 |
714162 |
740255 |
1 |
| 40510 |
ENSG00000241768 |
RP11-206L10.9 |
|
lincRNA |
1 |
740179 |
745440 |
1 |
| 39574 |
ENSG00000240453 |
RP11-206L10.10 |
|
lincRNA |
1 |
745489 |
753092 |
-1 |
| 28483 |
ENSG00000225880 |
LINC00115 |
LINC00115 |
lincRNA |
1 |
761586 |
762902 |
-1 |
| 30676 |
ENSG00000228794 |
RP11-206L10.11 |
|
lincRNA |
1 |
762988 |
789791 |
1 |
| 31870 |
ENSG00000230368 |
FAM41C |
FAM41C |
lincRNA |
1 |
803451 |
812283 |
-1 |
| 32131 |
ENSG00000230699 |
RP11-54O7.1 |
|
antisense |
1 |
846815 |
850328 |
1 |
| 40092 |
ENSG00000241180 |
RP11-54O7.2 |
|
antisense |
1 |
849551 |
850351 |
1 |
| 26897 |
ENSG00000223764 |
RP11-54O7.3 |
|
processed_transcript |
1 |
852250 |
855072 |
-1 |
| 16825 |
ENSG00000187634 |
SAMD11 |
SAMD11 |
protein_coding |
1 |
860260 |
879955 |
1 |
| 17191 |
ENSG00000188976 |
NOC2L |
NOC2L |
protein_coding |
1 |
879584 |
894689 |
-1 |
| 16919 |
ENSG00000187961 |
KLHL17 |
KLHL17 |
protein_coding |
1 |
895967 |
901095 |
1 |
| 16809 |
ENSG00000187583 |
PLEKHN1 |
PLEKHN1 |
protein_coding |
1 |
901877 |
911245 |
1 |
| 16826 |
ENSG00000187642 |
C1orf170 |
C1orf170 |
protein_coding |
1 |
910579 |
917497 |
-1 |
| 17005 |
ENSG00000188290 |
HES4 |
HES4 |
protein_coding |
1 |
934342 |
935552 |
-1 |
| 27805 |
ENSG00000224969 |
RP11-54O7.11 |
|
antisense |
1 |
947377 |
948573 |
-1 |
Total number of rows: 38378
Table truncated, full table size 2671 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL15997_GENCODEv10_metaProbeSet.txt.gz |
792.1 Kb |
(ftp)(http) |
TXT |
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