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Platform GPL16035 Query DataSets for GPL16035
Status Public on Oct 31, 2012
Title TUS mouse 22k v1.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer Tokyo University of Science
Manufacture protocol Each cDNA was extracted from cDNA library by Wizard SV 96 Plasmid DNA Purification System (Promega) and amplified by polymerase chain reaction (PCR) using Taq polymerase (Promega). PCR products were purified by isopropanol precipitation and resuspended in 50% DMSO, and spotted to GAPS II Coated Slides (Corning) using Micro Grid II (BioRobotics). After spotting, cDNAs were anchored to slide glasses by heat denaturation at 100°C and UV cross-linking (200 mJ).
 
 
Submission date Sep 10, 2012
Last update date Oct 31, 2012
Contact name Hitoshi Sasaki
E-mail(s) [email protected]
Organization name Tokyo University of Science
Department Department of Biological Science and Technology
Lab Murakami Laboratory
Street address 2641 Yamazaki
City Noda
State/province Chiba
ZIP/Postal code 278-8510
Country Japan
 
Samples (108) GSM1000730, GSM1000731, GSM1000732, GSM1000733, GSM1000734, GSM1000735 
Series (2)
GSE40754 Comparison of transcriptome of high differentiation-inducible murine erythroleukemia cells and low differentiation-inducible murine erythroleukemia cells
GSE43849 Expression profiles of high differentiation-inducible murine erhthroleukemia cells

Data table header descriptions
ID
Daughter Rearrayed clone name
Parent Source clone name
Clone Verification Either the 3' sequence or the 5' sequence show sufficient homology to verify the address of the clone is correct. This field has a link to the sequence verification pages (with an arrow pointing at your clone of interest).
FullSeq Value='Y' indicates full sequence for the clone is available. 3' sequence and 5' sequence assembled using Phred/Phrap system. This field has a link to the sequence pages for the cDNAs of interest.
Sequence Name (3') 3' sequence of the Daughter Clone
3' Sequence verified The 3' sequence of the Daughter clone shows sufficient homology to the 3' parent clone to verify the sequence. Values are 'Y'= verified, 'U'= Unvarifiable, <blank>=not verified, 'O'=Orphan. An Orphan is any clone which has been sequence verified by multiple sequences obtained from the daughter clones, but does not match the sequence of the parent clone.
Length Length of 3' sequence of the Daughter Clone
Genbank accession number (3') GenBank Accession number of the 3' end Sequence of the Daughter Clone
3' Putative Gene ID based on NIA Mouse Gene Index version 4 The 3' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering. For more information please visit NIA Mouse Gene Index version 4 at http://lgsun.grc.nia.nih.gov/geneindex4/.
3' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 3' sequence present.
NIA Mouse Gene Index version 4 cluster NIA Mouse Gene Index version 4 cluster in which 3' Sequence present.
Chromosome based on NIA Mouse Gene Index version4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome in which 3' sequence present.
Strand information based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome strand in which 3' sequence present.
3' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome start position in which 3' sequence present.
3' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome end position in which 3' sequence present.
Sequence Name (5') 5' sequence of the Daughter Clone
5' Sequence verified The 5' sequence of the Daughter clone shows sufficient homology to the 5' parent clone to verify the sequence. Values are 'Y'= verified, 'U'= Unvarifiable, <blank>=not verified, 'O'=Orphan. An Orphan is any clone which has been sequence verified by multiple sequences obtained from the daughter clones, but does not match the sequence of the parent clone.
Length Length of 5' sequence of the Daughter Clone
Genbank accession number (5') GenBank Accession number of the 5' end Sequence of the Daughter Clone
5' Putative Gene ID based on NIA Mouse Gene Index version 4 The 5' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering. For more information please visit NIA Mouse Gene Index version 4 at http://lgsun.grc.nia.nih.gov/geneindex4/.
5' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 5' sequence present.
NIA Mouse Gene Index version 4 cluster NIA Mouse Gene Index version 4 cluster in which 5' Sequence present.
Chromosome based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome in which 5' sequence present.
Strand information based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome strand in which 5' sequence present.
5' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome start position in which 5' sequence present.
5' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome end position in which 5' sequence present.
GB_ACC GenBank accession
CLONE_ID

Data table
ID Daughter Parent Clone Verification FullSeq Sequence Name (3') 3' Sequence verified Length Genbank accession number (3') 3' Putative Gene ID based on NIA Mouse Gene Index version 4 3' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster Chromosome based on NIA Mouse Gene Index version4 'U' cluster Strand information based on NIA Mouse Gene Index version 4 'U' cluster 3' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 3' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 Sequence Name (5') 5' Sequence verified Length Genbank accession number (5') 5' Putative Gene ID based on NIA Mouse Gene Index version 4 5' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster Chromosome based on NIA Mouse Gene Index version 4 'U' cluster Strand information based on NIA Mouse Gene Index version 4 'U' cluster 5' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 5' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 GB_ACC CLONE_ID
H3001A01 H3001A01 C0001A09 Y H3001A01-3 U 0 H3001A01-5 Y 589 CK334091 "H3001A01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3001A01 5', mRNA sequence" U095210 chr18 + 76450978 76451567 H3001A01
H3001A02 H3001A02 C0001B02 Y Y H3001A02-3 Y 330 BG062929 secretin Sct U029453 chr7 - 148464221 148465032 H3001A02-5 Y 373 BG076506 secretin Sct U029453 chr7 - 148464221 148465032 BG062929 H3001A02
H3001A03 H3001A03 C0001C01 Y H3001A03-3 Y 437 BG062930 "DNA segment, Chr 11, Wayne State University 99, expressed" D11wsu99e U033596 chr11 - 113522632 113545630 H3001A03-5 0 BG062930 H3001A03
H3001A04 H3001A04 C0001C05 Y Y H3001A04-3 Y 603 BG062931 "complement component 1, q subcomponent binding protein" C1qbp U033012 chr11 - 70791308 70796528 H3001A04-5 316 BG076507 "complement component 1, q subcomponent binding protein" C1qbp U033012 chr11 - 70791308 70796528 BG062931 H3001A04
H3001A05 H3001A05 C0001C07 Y H3001A05-3 Y 234 BG062932 "predicted gene, ENSMUSG00000048936" ENSMUSG00000048936 U019356 chr19 - 29828219 29880499 H3001A05-5 228 BG062932 H3001A05
H3001A06 H3001A06 C0001D10 U H3001A06-3 U 0 H3001A06-5 0 H3001A06
H3001A07 H3001A07 C0001D11 Y H3001A07-3 Y 465 BG062933 NADH dehydrogenase (ubiquinone) Fe-S protein 5 Ndufs5 U017140 chr16 + 42955672 42956409 H3001A07-5 0 BG062933 H3001A07
H3001A08 H3001A08 C0001E03 Y H3001A08-3 Y 627 BG062934 myosin IB Myo1b U021308 chr1 - 51806601 51972819 H3001A08-5 325 BG076509 myosin IB Myo1b U021308 chr1 - 51806601 51972819 BG062934 H3001A08
H3001A09 H3001A09 C0001E04 U H3001A09-3 U 0 H3001A09-5 0 H3001A09
H3001A10 H3001A10 C0001E05 Y H3001A10-3 Y 522 BG062935 "H3001A10-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3001A10 3', mRNA sequence" U030404 chr8 - 128058094 128058617 H3001A10-5 0 BG062935 H3001A10
H3001A11 H3001A11 C0001H10 Y Y H3001A11-3 Y 582 BG062936 gephyrin Gphn U014129 chr12 + 79327365 79785759 H3001A11-5 0 BG062936 H3001A11
H3001A12 H3001A12 C0002A05 Y Y H3001A12-3 Y 518 BG062937 bromodomain containing 4 Brd4 U037661 chr17 - 32333218 32421667 H3001A12-5 Y 289 BG076510 bromodomain containing 4 Brd4 U037661 chr17 - 32333218 32421667 BG062937 H3001A12
H3001B01 H3001B01 C0002C05 Y H3001B01-3 Y 507 BG063015 RIKEN cDNA 9430023L20 gene 9430023L20Rik U016687 chr15 + 101114700 101121375 H3001B01-5 125 BG076511 RIKEN cDNA 9430023L20 gene 9430023L20Rik U016687 chr15 + 101114700 101121375 BG063015 H3001B01
H3001B02 H3001B02 C0002C06 Y H3001B02-3 Y 713 BG063016 ROD1 regulator of differentiation 1 (S. pombe) Rod1 U025125 chr4 - 59484748 59562832 H3001B02-5 242 BG076512 ROD1 regulator of differentiation 1 (S. pombe) Rod1 U025125 chr4 - 59484748 59562832 BG063016 H3001B02
H3001B03 H3001B03 C0002D03 Y Y H3001B03-3 Y 561 BG063017 zinc finger protein 800 Zfp800 U027100 chr6 - 28189928 28348005 H3001B03-5 74 BG063017 H3001B03
H3001B04 H3001B04 C0002D05 Y Y H3001B04-3 Y 658 BG063018 transmembrane protein 30A Tmem30a U031129 chr9 - 79616058 79641367 H3001B04-5 122 BG076514 transmembrane protein 30A Tmem30a U031129 chr9 - 79616058 79641367 BG063018 H3001B04
H3001B05 H3001B05 C0002D08 Y H3001B05-3 Y 655 BG063019 tetraspanin 32 Tspan32 U008988 chr7 + 150190950 150205549 H3001B05-5 122 BG076515 tetraspanin 32 Tspan32 U008988 chr7 + 150190950 150205549 BG063019 H3001B05
H3001B06 H3001B06 C0002F06 Y Y H3001B06-3 Y 729 BG063020 "zinc finger, MYM-type 6" Zmym6 U004837 chr4 + 126754626 126806904 H3001B06-5 463 BG076516 BG063020 H3001B06
H3001B07 H3001B07 C0002F10 Y H3001B07-3 Y 690 BG063021 tripartite motif-containing 36 Trim36 U038399 chr18 - 46324953 46372238 H3001B07-5 302 BG076517 tripartite motif-containing 36 Trim36 U038399 chr18 - 46324953 46372238 BG063021 H3001B07
H3001B08 H3001B08 C0002F11 Y Y H3001B08-3 Y 644 BG063022 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Lyn U041317 chr4 + 3605248 3718760 H3001B08-5 449 BG076518 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Lyn U041317 chr4 + 3605248 3718760 BG063022 H3001B08

Total number of rows: 22656

Table truncated, full table size 4990 Kbytes.




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