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| Status |
Public on Mar 01, 2013 |
| Title |
[atSNPtilx520433] Arabidopsis Tiling array [TAIR9-based custom CDF, ORF version] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| |
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| Description |
Chip Definition File based on TAIR9 genome. The CDF file is included as a supplementary file.
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| |
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| Submission date |
Nov 20, 2012 |
| Last update date |
Nov 20, 2012 |
| Contact name |
David Bryant Lowry |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Texas at Austin
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| Department |
Integrative Biology
|
| Lab |
Thomas Juenger
|
| Street address |
1 University Station #C0930
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| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
| |
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| Samples (208)
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GSM1039267, GSM1039268, GSM1039269, GSM1039270, GSM1039271, GSM1039272
GSM1039273, GSM1039274, GSM1039275, GSM1039276, GSM1039277, GSM1039278, GSM1039279, GSM1039280, GSM1039281, GSM1039282, GSM1039283, GSM1039284, GSM1039285, GSM1039286, GSM1039287, GSM1039288, GSM1039289, GSM1039290, GSM1039291, GSM1039292, GSM1039293, GSM1039294, GSM1039295, GSM1039296, GSM1039297, GSM1039298, GSM1039299, GSM1039300, GSM1039301, GSM1039302, GSM1039303, GSM1039304, GSM1039305, GSM1039306, GSM1039307, GSM1039308, GSM1039309, GSM1039310, GSM1039311, GSM1039312, GSM1039313, GSM1039314, GSM1039315, GSM1039316, GSM1039317, GSM1039318, GSM1039319, GSM1039320, GSM1039321, GSM1039322, GSM1039323, GSM1039324, GSM1039325, GSM1039326, GSM1039327, GSM1039328, GSM1039329, GSM1039330, GSM1039331, GSM1039332, GSM1039333, GSM1039334, GSM1039335, GSM1039336, GSM1039337, GSM1039338, GSM1039339, GSM1039340, GSM1039341, GSM1039342, GSM1039343, GSM1039344, GSM1039345, GSM1039346, GSM1039347, GSM1039348, GSM1039349, GSM1039350, GSM1039351, GSM1039352, GSM1039353, GSM1039354, GSM1039355, GSM1039356, GSM1039357, GSM1039358, GSM1039359, GSM1039360, GSM1039361, GSM1039362, GSM1039363, GSM1039364, GSM1039365, GSM1039366, GSM1039367, GSM1039368, GSM1039369, GSM1039370, GSM1039371, GSM1039372, GSM1039373, GSM1039374, GSM1039375, GSM1039376, GSM1039377, GSM1039378, GSM1039379, GSM1039380, GSM1039381, GSM1039382, GSM1039383, GSM1039384, GSM1039385, GSM1039386, GSM1039387, GSM1039388, GSM1039389, GSM1039390, GSM1039391, GSM1039392, GSM1039393, GSM1039394, GSM1039395, GSM1039396, GSM1039397, GSM1039398, GSM1039399, GSM1039400, GSM1039401, GSM1039402, GSM1039403, GSM1039404, GSM1039405, GSM1039406, GSM1039407, GSM1039408, GSM1039409, GSM1039410, GSM1039411, GSM1039412, GSM1039413, GSM1039414, GSM1039415, GSM1039416, GSM1039417, GSM1039418, GSM1039419, GSM1039420, GSM1039421, GSM1039422, GSM1039423, GSM1039424, GSM1039425, GSM1039426, GSM1039427, GSM1039428, GSM1039429, GSM1039430, GSM1039431, GSM1039432, GSM1039433, GSM1039434, GSM1039435, GSM1039436, GSM1039437, GSM1039438, GSM1039439, GSM1039440, GSM1039441, GSM1039442, GSM1039443, GSM1039444, GSM1039445, GSM1039446, GSM1039447, GSM1039448, GSM1039449, GSM1039450, GSM1039451, GSM1039452, GSM1039453, GSM1039454, GSM1039455, GSM1039456, GSM1039457, GSM1039458, GSM1039459, GSM1039460, GSM1039461, GSM1039462, GSM1039463, GSM1039464, GSM1039465, GSM1039466, GSM1039467, GSM1039468, GSM1039469, GSM1039470, GSM1039471, GSM1039472, GSM1039473, GSM1039474
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| Series (1) |
| GSE42408 |
EXPRESSION QTL MAPPING ACROSS SOIL MOISTURE ENVIRONMENTS REVEALS CONTRASTING ASSOCIATIONS WITH GENOMIC FEATURES IN ARABIDOPSIS THALIANA |
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| Data table header descriptions |
| ID |
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| probe_name |
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| ORF |
TAIR locus tag |
| Description |
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| Chromosome |
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| RANGE_START |
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| RANGE_END |
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| RANGE_STRAND |
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| Data table |
| ID |
probe_name |
ORF |
Description |
Chromosome |
RANGE_START |
RANGE_END |
RANGE_STRAND |
| AT1G01010 |
AT1G01010_at |
AT1G01010 |
ANAC001 | ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor |
chr1 |
3631 |
5899 |
FORWARD |
| AT1G01020 |
AT1G01020_at |
AT1G01020 |
ARV1 | ARV1 |
chr1 |
5928 |
8737 |
REVERSE |
| AT1G01030 |
AT1G01030_at |
AT1G01030 |
NGA3 | NGA3 (NGATHA3); transcription factor |
chr1 |
11649 |
13714 |
REVERSE |
| AT1G01040 |
AT1G01040_at |
AT1G01040 |
DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III |
chr1 |
23146 |
31227 |
FORWARD |
| AT1G01050 |
AT1G01050_at |
AT1G01050 |
AtPPa1 | AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase |
chr1 |
31170 |
33153 |
REVERSE |
| AT1G01060 |
AT1G01060_at |
AT1G01060 |
LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor |
chr1 |
33666 |
37840 |
REVERSE |
| AT1G01070 |
AT1G01070_at |
AT1G01070 |
nodulin MtN21 family protein |
chr1 |
38752 |
40944 |
REVERSE |
| AT1G01080 |
AT1G01080_at |
AT1G01080 |
33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative |
chr1 |
45296 |
47019 |
REVERSE |
| AT1G01090 |
AT1G01090_at |
AT1G01090 |
PDH-E1 ALPHA | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) |
chr1 |
47485 |
49286 |
REVERSE |
| AT1G01100 |
AT1G01100_at |
AT1G01100 |
60S acidic ribosomal protein P1 (RPP1A) |
chr1 |
50090 |
51108 |
REVERSE |
| AT1G01110 |
AT1G01110_at |
AT1G01110 |
IQD18 | IQD18 (IQ-domain 18) |
chr1 |
52869 |
54685 |
FORWARD |
| AT1G01120 |
AT1G01120_at |
AT1G01120 |
KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase |
chr1 |
57269 |
59167 |
REVERSE |
| AT1G01130 |
AT1G01130_at |
AT1G01130 |
unknown protein |
chr1 |
61963 |
63811 |
REVERSE |
| AT1G01140 |
AT1G01140_at |
AT1G01140 |
CIPK9, SnRK3.12, PKS6 | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase |
chr1 |
64166 |
67625 |
REVERSE |
| AT1G01150 |
AT1G01150_at |
AT1G01150 |
DNA binding / protein binding / zinc ion binding |
chr1 |
70115 |
72138 |
REVERSE |
| AT1G01160 |
AT1G01160_at |
AT1G01160 |
GIF2 | SSXT protein-related / transcription co-activator-related |
chr1 |
72339 |
74096 |
FORWARD |
| AT1G01170 |
AT1G01170_at |
AT1G01170 |
ozone-responsive stress-related protein, putative |
chr1 |
73931 |
74737 |
REVERSE |
| AT1G01180 |
AT1G01180_at |
AT1G01180 |
unknown protein |
chr1 |
75633 |
77446 |
FORWARD |
| AT1G01190 |
AT1G01190_at |
AT1G01190 |
CYP78A8 | CYP78A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding |
chr1 |
83045 |
84864 |
REVERSE |
| AT1G01200 |
AT1G01200_at |
AT1G01200 |
ATRABA3, ATRAB-A3 | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding |
chr1 |
86515 |
88213 |
REVERSE |
Total number of rows: 26887
Table truncated, full table size 3580 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16303_TilingatSNPtilx520433_At_TAIRG.cdf.gz |
5.7 Mb |
(ftp)(http) |
CDF |
| GPL16303_TilingatSNPtilx520433_At_TAIRG_desc.txt.gz |
822.0 Kb |
(ftp)(http) |
TXT |
| GPL16303_TilingatSNPtilx520433_At_TAIRG_mapping.txt.gz |
2.7 Mb |
(ftp)(http) |
TXT |
| GPL16303_TilingatSNPtilx520433_At_TAIRG_probe_tab.txt.gz |
5.1 Mb |
(ftp)(http) |
TXT |
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