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Platform GPL16784 Query DataSets for GPL16784
Status Public on Apr 01, 2013
Title Agilent-039889 MosFish_array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gambusia holbrooki
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16039889 or 2539889.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 13, 2013
Last update date Apr 01, 2013
Contact name Erica Karin Brockmeier
E-mail(s) [email protected]
Organization name University of Florida
Street address 2187 Mowry Road
City Gainesville
State/province FL
ZIP/Postal code 32611
Country USA
 
Samples (46) GSM1100263, GSM1100264, GSM1100265, GSM1100266, GSM1100267, GSM1100268 
Series (3)
GSE45261 Evaluation of hepatic gene expression profiles during androgen exposure in female mosquitofish
GSE49238 Evaluating the endocrine disrupting impacts of paper mill exposure on the Eastern Mosquitofish (Gambusia holbrooki) by gene expression analysis
GSE55518 Hepatic transcriptome analysis of male and female Eastern Mosquitofish (Gambusia holbrooki) exposed to a progestin and anti-progesterone reveals the mode of action of endocrine disruption of synthetic steroids in an aquatic organism

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 MosFish_UF_15904 MosFish_UF_15904 FALSE contig57805___1rc_nrnt unmapped TCACAACAACGGAGTGGCTGTTCTAAAAGGCACAAGATGCGAGTGCGTGTGTCCTACCGG
5 96 156 MosFish_UF_13000 MosFish_UF_13000 FALSE Mosfish_hybridAssem.1281.C1___1_nr1nt0 unmapped TATTTTTAAACAAAATCCTTCGGTAAGCTAGCGGTGGCGTAGCACGTTGAGCTGACGTCA
6 96 154 MosFish_UF_16789 MosFish_UF_16789 FALSE contig02674___1_nr1nt0 unmapped TGGACATGGAAGATGAGTCATTAAACACAACCGTCAGCCTAATCAGGAGCACAATGAAGC
7 96 152 MosFish_UF_16142 MosFish_UF_16142 FALSE Mosfish_hybridAssem.19838.C1___1_nrnt unmapped GCTTATAACAGGTAGCTCGTTTCTGCTTGGCCCAGTGAACTCTGAATAAAAGCTACAATT
8 96 150 MosFish_UF_10893 MosFish_UF_10893 FALSE HAT7E5402DOMOS___1_nrnt0 unmapped AACTGTTATGTTTCAGCTGCTCTGAAGGAGCAGTACACCTCGCAGGTGTTTTCTATGTCT
9 96 148 MosFish_UF_17379 MosFish_UF_17379 FALSE contig40949___1rc_nr0nt1 unmapped GATAAGATTGTGACATTTGATGATGTTCTGCCTTCCTCTGACAAAGAGAAGTCACGTTTC
10 96 146 MosFish_UF_13154 MosFish_UF_13154 FALSE Mosfish_hybridAssem.118.C1___1_nrnt unmapped GACGTAGAGCTAAACTTTGGGGTTATGTTATGTAACTGTACAGAAATCATGTAGTGTTAA
11 96 144 MosFish_UF_22632 MosFish_UF_22632 FALSE contig27550___1_nrnt unmapped TGGACTGGTCATTGCTGTCATGGGCTACCAGAAGAAGATCAAAACGATGACAGACAAGTA
12 96 142 MosFish_UF_24336 MosFish_UF_24336 FALSE contig51053___1_nrnt unmapped TTATACTCTGGTTAATGATCGAGCTGGCTATTATCGGTTCAGACATGCAGGAGGTCATCG
13 96 140 MosFish_UF_22234 MosFish_UF_22234 FALSE HAT7E5402DGPZA___1_nr0nt1 unmapped ACTGAATGTAGTGCAGCATGTTGGCATGCTGTATAATAGACAGTCCTACCATTTGGCTGC
14 96 138 MosFish_UF_14248 MosFish_UF_14248 FALSE Mosfish_hybridAssem.13098.C1___1rc_nrnt-1 unmapped GAAGTGGGAGGAGCACAAGTATTTCTGTGAGAAAGCTGGGAAAGCGTTGCCTCCTCCTGA
15 96 136 MosFish_UF_18266 MosFish_UF_18266 FALSE Mosfish_hybridAssem.13237.C1___1_nr0nt unmapped GTTACTCACACCCAGGCTCCCTAGAACTTAGAATCTTGAACTCTGCAGTCAAAGAGTAAC
16 96 134 MosFish_UF_10023 MosFish_UF_10023 FALSE contig07324___1_nrnt unmapped GCGGGTCACAAAGCATCTGGATGGTTGATGATGATTGTCTAAACTCTTTTAAACCCACAT
17 96 132 MosFish_UF_15559 MosFish_UF_15559 FALSE Mosfish_hybridAssem.116.C1___1_nrnt unmapped TCCAAATGATGTCTCTTTGTTCTCTGCTCTGAAGTCGAAGGTGTCGGTCTTTGTCGTAAT
18 96 130 MosFish_UF_21110 MosFish_UF_21110 FALSE HAT7E5402EGJQ7___1_nr0nt unmapped CACCAGCATGTGAACGTGCAATTTGAGATCTCAATTTGATAAAAAGGGCATTATGAATAA
19 96 128 MosFish_UF_13471 MosFish_UF_13471 FALSE Mosfish_hybridAssem.3272.C1___1_nrnt unmapped GTGTCAACGGCTGAAGTTCATTAAACAGATGTTCAACATCTTCACTCCATAAATACATAA
20 96 126 MosFish_UF_15090 MosFish_UF_15090 FALSE contig68383___1rc_nrnt unmapped AAGTTTGTCAAAATTGGTCGACCAGGATACAAAGTGACCAAGCAGAGGGATCCAGAGATC

Total number of rows: 15744

Table truncated, full table size 2280 Kbytes.




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