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Platform GPL1695 Query DataSets for GPL1695
Status Public on Nov 10, 2004
Title yeast intergenic array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
 
Description -Platform: amino-silane coated glass slides (GAPS II, Corning)

-S. cerevisiae intergenic regions amplified from S288C genomic DNA (ResGen) using the intergenic region primer oligonucleotides (ResGen) (Harismendy et al. EMBO J. 22(18): 4738-4747, 2003). The primers allow the amplification of the sequence located on either side of elements such as open reading frames, tRNAs, small nuclear RNAs, Ty elements, solo δ, etc. A complete description of the primers can be obtained on the web site (ftp://ftp.resgen.com/pub/genepairs/yeast_intergenic).

-The PCR products were purified and spotted using an automated arrayer (MicroGrid II, BioRobotics)
 
Contributor(s) Schawalder SB, Kabani M, Choudhurry U, Howald I, Werner M, Shore D
Submission date Nov 08, 2004
Last update date Sep 08, 2006
Contact name Stephan B. Schawalder
E-mail(s) [email protected]
Phone +41 22 379 61 77
Organization name University of Geneva
Department Departement of Molecular biology
Lab Group Shore
Street address Quai Ansermet 30
City Geneva
ZIP/Postal code 1211
Country Switzerland
 
Samples (15) GSM34772, GSM34773, GSM34774, GSM34775, GSM34776, GSM34777 
Series (1)
GSE1944 Genome-wide binding of Fhl1 and Ifh1 +/- Rapamycin

Data table header descriptions
ID
SIZE Size of PCR product
START Start of PCR reaction
END End of PCR reaction
SPOT_ID spot identifier

Data table
ID SIZE START END SPOT_ID
iYCR102C 1266 304189 305455 yeast intergenic region iYCR102C
iYCR083W 350 258684 259034 yeast intergenic region iYCR083W
iYCR051W 255 213469 213724 yeast intergenic region iYCR051W
iYCR027C 302 167713 168015 yeast intergenic region iYCR027C
itT(AGU)C 402 294278 294680 yeast intergenic region itT(AGU)C
iYCR075C 478 247538 248016 yeast intergenic region iYCR075C
iYCR043C 233 205375 205608 yeast intergenic region iYCR043C
iYCR022C 773 157473 158246 yeast intergenic region iYCR022C
iYBR051W 382 338294 338676 yeast intergenic region iYBR051W
iYBR029C 550 297698 298248 yeast intergenic region iYBR029C
iYBR007C-0 773 250973 251746 yeast intergenic region iYBR007C-0
itI(AAU)B 62 197526 197588 yeast intergenic region itI(AAU)B
iYBRWdelta16 666 327661 328327 yeast intergenic region iYBRWdelta16
iYBR022W 157 284227 284384 yeast intergenic region iYBR022W
iYBR001C 425 241241 241666 yeast intergenic region iYBR001C
iYBL019W 83 185874 185957 yeast intergenic region iYBL019W
iYDR514C 430 1473047 1473477 yeast intergenic region iYDR514C
iYDR487C 208 1429012 1429220 yeast intergenic region iYDR487C
iYDR463W 497 1388409 1388906 yeast intergenic region iYDR463W
iYDR438W 290 1339420 1339710 yeast intergenic region iYDR438W

Total number of rows: 6814

Table truncated, full table size 403 Kbytes.




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