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Platform GPL18706 Query DataSets for GPL18706
Status Public on Sep 29, 2014
Title Agilent-036223 Vitis_vinifera.IGGP_12x.2_vs20110825
Technology type in situ oligonucleotide
Distribution commercial
Organism Vitis vinifera
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16036223 or 2536223.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 19, 2014
Last update date May 19, 2014
Contact name Sam Henderson
E-mail(s) [email protected]
Organization name University of Adeladie
Street address Hartley Grove
City Urrbrae
State/province South Australia
ZIP/Postal code 5064
Country Australia
 
Samples (22) GSM1388329, GSM1388330, GSM1388331, GSM1388332, GSM1388333, GSM1388334 
Series (1)
GSE57770 Root transcriptome comparison between grapevines Cabernet Sauvignon, 140 Ruggeri and K51-40 (+/- salt stress)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 CUST_27874_PI426553162 CUST_27874_PI426553162 FALSE GSVIVT01036993001 unmapped CATTGCAAAAATGGGTGGTGGTTCATCACCTGCAACTATCATCCTCCTGGAAATATGGAG
5 192 320 CUST_1946_PI426553162 CUST_1946_PI426553162 FALSE GSVIVT01027434001 unmapped AGGTTGGCTTTGGATCCCACCTTACATACTGATTCTCAGATGATTATGCCTAGGAAGGCA
6 192 318 CUST_4981_PI426553162 CUST_4981_PI426553162 FALSE GSVIVT01009071001 unmapped TAATCTATTTGTTTTTCCGGAAAAGGGGACAAGGTGAATAAGTGCATGAATGCACTGTGA
7 192 316 CUST_20321_PI426553162 CUST_20321_PI426553162 FALSE GSVIVT01012859001 unmapped GCAGTTTCATTGCCATTGCCAATTTTTTCTCTGGACATTTTGGGTTTCTTTGTAACATTA
8 192 314 CUST_50731_PI426553162 CUST_50731_PI426553162 FALSE GSVIVT01032544001 unmapped GTCATAGTTCTGTTCGAGAGGCTATCATGTTTCCTTCCATTTCTACTGGAGGTGGAGTGA
9 192 312 CUST_49714_3x CUST_49714_3x FALSE GSVIVT01033108001 unmapped ATATGCTTATTGTACCCAAGTATCAAGCAGCTGGGGTGTCTCCAGTAGTTGGGATCTTGA
10 192 310 CUST_12496_PI426553162 CUST_12496_PI426553162 FALSE GSVIVT01010006001 unmapped TCCATCAAACAAAAGAATATTCCATTCATAGATTTTCTTGGCGTGGGAATTTCTTCCTGA
11 192 308 CUST_4029_PI426553162 CUST_4029_PI426553162 FALSE GSVIVT01023355001 unmapped AATGTCATCCACTCAACCATTTCTCAAGGGGGTCGTGTTTGAATCCCTGCATATGCTCTA
12 192 306 CUST_46653_PI426553162 CUST_46653_PI426553162 FALSE GSVIVT01028785001 unmapped AATAGTACCCATCCTTCATCAAGGGCTACATGTAGTTATTCCACAATGTCACCTAGATAG
13 192 304 CUST_28265_PI426553162 CUST_28265_PI426553162 FALSE GSVIVT01008796001 unmapped GATCCAGTACATCAATTGGTTTTGTTGGTTTTATGATACTGAAGCAAAGATTGTCCTTCA
14 192 302 CUST_7075_PI426553162 CUST_7075_PI426553162 FALSE GSVIVT01017397001 unmapped ATTTGTTACAGCAGGAACGAGGAAAAATTAGCTGTTTGTAAGGATCATTGAGCAGATGTG
15 192 300 CUST_1538_PI426553162 CUST_1538_PI426553162 FALSE GSVIVT01023928001 unmapped GCACTATCCTTTGCAACAAGAATAAATCAGTAGCAAAACTAGAATCAAGCATTCAAGATC
16 192 298 CUST_51915_PI426553162 CUST_51915_PI426553162 FALSE GSVIVT01036939001 unmapped GGAATCCCTAGAAGAAGGATATAAGTTTGGAGTTGATGTTGGTAGTGGTTGTAATTTTTT
17 192 296 CUST_2929_PI426553162 CUST_2929_PI426553162 FALSE GSVIVT01027344001 unmapped GATTCATTGGCTTGTGTAAATGCATCAGGGCCAATTTTTGCACTAAATACCTGTAGGTAG
18 192 294 CUST_17663_PI426553162 CUST_17663_PI426553162 FALSE GSVIVT01017532001 unmapped TCAATTGCTACGTTGGAACCACCAAGAGGTGTCCTCTTGGAGTGCCTCATAATTTCATTC
19 192 292 CUST_46687_PI426553162 CUST_46687_PI426553162 FALSE GSVIVT01019751001 unmapped CAGCCAACAAAAACCGAAAGGAATGTTTTGCCCTTTTGTAGCTGAAAGTCACAGTATTTT
20 192 290 CUST_37563_PI426553162 CUST_37563_PI426553162 FALSE GSVIVT01024125001 unmapped ACTATCCCATGCAGAGAAGAAGCCTTCATTGATCTAACTTGCAGTTTGAACTGCTCATAA

Total number of rows: 62976

Table truncated, full table size 9207 Kbytes.




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