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Status
Public on Mar 08, 2016
Title
BaSysBio Staphylococcus aureus T1 385K array 080604_SA_JH_Tiling (gene level)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Staphylococcus aureus subsp. aureus NCTC 8325 Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array produced by NimbleGen (Madison, WI USA) with Maskless Array Synthesizer (MAS) technology.
Description
CP000253.1
Submission date
Jun 19, 2015
Last update date
Mar 08, 2016
Contact name
Pierre Nicolas
E-mail(s)
[email protected] Phone
+33-1-3465-2894
Organization name
INRAE - Université Paris-Saclay
Lab
MaIAGE
Street address
INRAE - Domaine de Vilvert
City
Jouy-en-Josas
ZIP/Postal code
F-78350
Country
France
Samples (156)
GSM1715965 , GSM1715966 , GSM1715967 , GSM1715968 , GSM1715969 , GSM1715970
GSM1715971 ,
GSM1715972 ,
GSM1715973 ,
GSM1715974 ,
GSM1715975 ,
GSM1715976 ,
GSM1715977 ,
GSM1715978 ,
GSM1715979 ,
GSM1715980 ,
GSM1715981 ,
GSM1715982 ,
GSM1715983 ,
GSM1715984 ,
GSM1715985 ,
GSM1715986 ,
GSM1715987 ,
GSM1715988 ,
GSM1715989 ,
GSM1715990 ,
GSM1715991 ,
GSM1715992 ,
GSM1715993 ,
GSM1715994 ,
GSM1715995 ,
GSM1715996 ,
GSM1715997 ,
GSM1715998 ,
GSM1715999 ,
GSM1716000 ,
GSM1716001 ,
GSM1716002 ,
GSM1716003 ,
GSM1716004 ,
GSM1716005 ,
GSM1716006 ,
GSM1716007 ,
GSM1716008 ,
GSM1716009 ,
GSM1716010 ,
GSM1716011 ,
GSM1716012 ,
GSM1716013 ,
GSM1716014 ,
GSM1716015 ,
GSM1716016 ,
GSM1716017 ,
GSM1716018 ,
GSM1716019 ,
GSM1716020 ,
GSM1716021 ,
GSM1716022 ,
GSM1716023 ,
GSM1716024 ,
GSM1716025 ,
GSM1716026 ,
GSM1716027 ,
GSM1716028 ,
GSM1716029 ,
GSM1716030 ,
GSM1716031 ,
GSM1716032 ,
GSM1716033 ,
GSM1716034 ,
GSM1716035 ,
GSM1716036 ,
GSM1716037 ,
GSM1716038 ,
GSM1716039 ,
GSM1716040 ,
GSM1716041 ,
GSM1716042 ,
GSM1716043 ,
GSM1716044 ,
GSM1716045 ,
GSM1716046 ,
GSM1716047 ,
GSM1716048 ,
GSM1716049 ,
GSM1716050 ,
GSM1716051 ,
GSM1716052 ,
GSM1716053 ,
GSM1716054 ,
GSM1716055 ,
GSM1716056 ,
GSM1716057 ,
GSM1716058 ,
GSM1716059 ,
GSM1716060 ,
GSM1716061 ,
GSM1716062 ,
GSM1716063 ,
GSM1716064 ,
GSM1716065 ,
GSM1716066 ,
GSM1716067 ,
GSM1716068 ,
GSM1716069 ,
GSM1716070 ,
GSM1716071 ,
GSM1716072 ,
GSM1716073 ,
GSM1716074 ,
GSM1716075 ,
GSM1716076 ,
GSM1716077 ,
GSM1716078 ,
GSM1716079 ,
GSM1716080 ,
GSM1716081 ,
GSM1716082 ,
GSM1716083 ,
GSM1716084 ,
GSM1716085 ,
GSM1716086 ,
GSM1716087 ,
GSM1716088 ,
GSM1716089 ,
GSM1716090 ,
GSM1716091 ,
GSM1716092 ,
GSM1716093 ,
GSM1716094 ,
GSM1716095 ,
GSM1716096 ,
GSM1716097 ,
GSM1716098 ,
GSM1716099 ,
GSM1716100 ,
GSM1716101 ,
GSM1716102 ,
GSM1716103 ,
GSM1716104 ,
GSM1716105 ,
GSM1716106 ,
GSM1716107 ,
GSM1716108 ,
GSM1716109 ,
GSM1716110 ,
GSM1716111 ,
GSM1716112 ,
GSM1716113 ,
GSM1716114 ,
GSM1716115 ,
GSM1716116 ,
GSM1716117 ,
GSM1716118 ,
GSM1716119 ,
GSM1716120 Series (2)
GSE70040 Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions
GSE70043 Staphylococcus aureus HG001
Relations Alternative to
GPL20589 (alternative)
Data table header descriptions ID Genbank locus_tag or unique identifier tag for new segments
GENOME_ACC CP000253.1
SPOT_ID GeneSymbol Gene name as in CP000253.1 or name (S1-S1192) for new segments
GeneType For each of the 1192 new sements, the type (category) provides information on the transcriptional context as described in Mäder, Nicolas et al. (to be submitted).
GeneStart Start position as in CP000253.1
GeneEnd End position as in CP000253.1
GeneStrand Strand as in CP000253.1 (+1/-1)
Data table ID GENOME_ACC SPOT_ID GeneSymbol GeneType GeneStart GeneEnd GeneStrand new_297_516_1
CP000253.1
new_297_516_1
S1
5'
297
516
1
SAOUHSC_00001
CP000253.1
SAOUHSC_00001
dnaA
NA
517
1878
1
new_1879_2155_1
CP000253.1
new_1879_2155_1
S2
intra
1879
2155
1
SAOUHSC_00002
CP000253.1
SAOUHSC_00002
dnaN
NA
2156
3289
1
SAOUHSC_00003
CP000253.1
SAOUHSC_00003
NA
NA
3670
3915
1
SAOUHSC_00004
CP000253.1
SAOUHSC_00004
recF
NA
3912
5024
1
SAOUHSC_00005
CP000253.1
SAOUHSC_00005
gyrB
NA
5034
6968
1
SAOUHSC_00006
CP000253.1
SAOUHSC_00006
gyrA
NA
7005
9668
1
SAOUHSC_00007
CP000253.1
SAOUHSC_00007
NA
NA
9755
10456
-1
new_10457_10702_-1
CP000253.1
new_10457_10702_-1
S3
5'
10457
10702
-1
SAOUHSC_00008
CP000253.1
SAOUHSC_00008
hutH
NA
10893
12407
1
new_12457_12691_1
CP000253.1
new_12457_12691_1
S4
indep
12457
12691
1
new_12693_12785_1
CP000253.1
new_12693_12785_1
S5
s-inter
12693
12785
1
SAOUHSC_00009
CP000253.1
SAOUHSC_00009
serS
NA
12786
14072
1
new_14073_14172_1
CP000253.1
new_14073_14172_1
S6
s-3'
14073
14172
1
SAOUHSC_00010
CP000253.1
SAOUHSC_00010
NA
NA
14722
15417
1
SAOUHSC_00012
CP000253.1
SAOUHSC_00012
NA
NA
15414
15743
1
new_15785_16105_1
CP000253.1
new_15785_16105_1
S7
5'
15785
16105
1
SAOUHSC_00013
CP000253.1
SAOUHSC_00013
NA
NA
16106
17074
1
new_17075_17337_1
CP000253.1
new_17075_17337_1
S8
inter
17075
17337
1
4028 273 Kbytes .Supplementary file Size Download File type/resource GPL20586_080604_SA_JH_Tiling.ndf.gz
20.0 Mb
(ftp) (http) NDF
GPL20586_080604_SA_JH_Tiling.pos.gz
4.8 Mb
(ftp) (http) POS
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