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Platform GPL20864 Query DataSets for GPL20864
Status Public on Nov 18, 2015
Title Corynebacterium glutamicum CGR_Oligo_array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Corynebacterium glutamicum
Manufacturer Takara Bio, Japan
Manufacture protocol 1. Design 60-mer oligonucleotides specific to coding sequences using TaKaRa-Bio design program, which designs oligonucleotides based on information including sequence specificity, palindrome structure, Tm, and length.
2. Spot oligonucleotides synthesized based on the design using the NGK INSULATOR spotter onto TaKaRa microarray silide.
3. After the print run is completed, process the fixation protocol of the glass.
 
 
Submission date Aug 27, 2015
Last update date Nov 18, 2015
Contact name Masayuki Inui
E-mail(s) [email protected]
Organization name Research institute of Innovative Technology for the Earth (RITE)
Street address 9-2 Kizugawadai, Kizugawa
City Kyoto
ZIP/Postal code 619-0292
Country Japan
 
Samples (19) GSM1862835, GSM1862836, GSM1862837, GSM1862838, GSM1942197, GSM1942198 
Series (7)
GSE72451 Overexpression of sigC in the wild type
GSE72453 Genome-wide analyses of C. glutamicum SigC
GSE75080 Transcriptome analysis of the C. glutamicum deletion mutant of rnc, which encodes an RNase III homolog

Data table header descriptions
ID
ORF
GENE Gene_name
STRAND Strand
SPOT_ID
SEQUENCE Probe_sequence

Data table
ID ORF GENE STRAND SPOT_ID SEQUENCE
ID_1 cgR_0001 dnaA + chromosomal replication initiator protein CGGATCGGAAGATTCGCCAAGAAATGACAGAAAAGCGCGATACCTACGATGAAATCCAGC
ID_10 cgR_0010 ssuR - putative transcription regulator protein AGATGCTTTTCGACGTGGACTCACACCAACAACTTTCTCCGATTTAGTCCAACTCTCCCA
ID_100 cgR_0096 copO - creatinine deaminase GAGAAGCACTCAGCCTCCATCGATATCCACACTGATGAAATTGACGATCCACATTCCCGA
ID_1000 cgR_0919 + miss_annotation GATCTCCAGGTTGGGCTCGCGGTGGGTGTCCAGGTCCTGAATGGCCTAATCGTCCTTGTA
ID_1001 cgR_0920 + Cytosine-specific methyltransferase ACCAGGATTATTGGAAGCGCACGTAGATACAGGATTCAGCTACCTGTCCTAGAGACCCTC
ID_1002 cgR_0921 - siderophore-interacting protein TGTGTTGGTCGCCGATAGCTCCACAAAGCTCACTTTCGAAGACATCGATGCTTACAAAAC
ID_1003 cgR_0922 - "ABC-type cobalamin/Fe3+-siderophores transport system, secreted component" AGTGCGAAGAGATCAAGTCCGAGCATGATGTCGAAGGTAAGACCGTCAACATGATTCGTC
ID_1004 cgR_0923 - membrane protein CGTGTGGACCGTATCGATCATCATGTTCGTGCTGGTCACTGCATGGAATGTGAAAACTTT
ID_1005 cgR_0924 + ABC-type cobalamin/Fe3+-siderophores transport system CTGTCACCGACGGATACGTTTACTACGCACCTGCAGATACCTACACCAACGAAAACATCA
ID_1006 cgR_0925 + "ABC-type cobalamin/Fe3+-siderophores transport system, permease component" CCTTGCAATTCGACATGCTCCAGCAATTGGGAACATGGTTTGCGGGTTCCTTTAATACAG
ID_1007 cgR_0926 + "ABC-type cobalamin/Fe3+-siderophores transport system, permease component" CTTACTTTGTTATGAACCACGTGTTCCGCGCACAAGGCGTCGTGTCCATCATTATTGAGA
ID_1008 cgR_0927 + "ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component" GGCCGTAAAGCACGGAATGATCGAAAAAGAGGGAGCACCTGAACAGATCATGAAAAACGA
ID_1009 cgR_0929 - membrane protein AAGAACCGCGGCAAGTTGGAGGACGTTAAAAAGACCCCCAACAACCTGTTCAAACTATAG
ID_101 cgR_0097 copR - secreted protein CTTTCTTAACTCTGCAAAAACCAAGACTGTAGCCTTCACCGCAACATTCGTTGGTGCAGC
ID_1010 cgR_0928 + probable pyridoxal phosphate aminotransferase AAGACTCATGACAGTAAGGGCACGTATTTCATCGTTGCGGATATTGGGGATCGTGATGGT
ID_1011 cgR_0930 - DNA or RNA helicase of superfamily II GAAGAACTAGGTGCAGAATTTAACGCACCAGTCATCGACGGCAAAACGCCCAACAAAAAG
ID_1012 cgR_0931 - hypothetical protein CTCGTGCGAAGATCCTGTCCTCTTTATCTAGGGTTTTAGTGGACAATCTGCACGCGGATT
ID_1013 cgR_0932 - miss_annotation GCCATGCCATACATTCTTTCAAACTCTGGGAACAAAAGTCACCTCAACAAGGCTTAAACT
ID_1014 cgR_6069 + hypothetical protein TTTGAAAGAATGTATGGCATGGCAAACGTAGAGAAGAAGCACTTCGTCGATCCGGCATGG
ID_1015 cgR_6070 rpf1 - hypothetical protein CAGTACGGCATCACCGTTCCAGCTGAGGTTGAGTCTTACTACAACGCTTTCGTCGGCTAA

Total number of rows: 3282

Table truncated, full table size 369 Kbytes.




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