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Platform GPL20909 Query DataSets for GPL20909
Status Public on Sep 14, 2015
Title Agilent-026610 Vibrio cholerae Microarray 60K (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Vibrio cholerae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 14, 2015
Last update date Sep 14, 2015
Contact name Jonghwan Baek
Organization name NIH
Department NCI
Lab Laboratory of Biochemistry and Molecular Biology
Street address 37 Convent Dr
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (8) GSM1876191, GSM1876192, GSM1876193, GSM1876194, GSM1876195, GSM1876196 
Series (1)
GSE72978 Genome-wide ParB2-DNA and RctB-DNA interaction analyses in Vibrio cholerae

Data table header descriptions
ID Agilent feature number
Row
Col Column
ControlType
ProbeName
SystematicName
PROBENAME
SEQUENCE
LOCATION
TIGR_ID
ORF ORF Name
DESCRIPTION
SPOT_ID Spot identifier

Data table
ID Row Col ControlType ProbeName SystematicName PROBENAME SEQUENCE LOCATION TIGR_ID ORF DESCRIPTION SPOT_ID
1 1 1 1 DarkCorner DarkCorner CONTROL
2 1 2 1 DarkCorner DarkCorner CONTROL
3 1 3 1 DarkCorner DarkCorner CONTROL
4 1 4 0 8780_VC60A chr1:619490-619431 8780_VC60A TTTTGTACCGACCATGGGTAATTTACACGAAGGCCATTTAACCCTGGTTCGTAAAGCTCG chr1:619490-619431_R tigr_db|VC_0591 panC panC pantoate--beta-alanine ligase
5 1 5 0 23119_VC60A chr1:1632611-1632670 23119_VC60A ATGGGGATTCCTGTGCTGCTATCGCGCTCGGGTGTGACTCAAATGGGGCTTGAGCTTGCG chr1:1632611-1632670 tigr_db|VC_1519 fdhD fdhD formate dehydrogenase accessory protein
6 1 6 0 48138_VC60A chr2:431890-431831 48138_VC60A GCAACCACCGCGGCTCAATGGGACTGGAAACGCCACGCGTTGACAGTCCCTCTTGAGGCG chr2:431890-431831_R NA NA
7 1 7 0 53482_VC60A chr2:808070-808011 53482_VC60A GTCATGGCGTGCCATAACGGGTTATTACGGCTCAATCTTCTTCCTACCTGCAGCTCCAAG chr2:808070-808011_R tigr_db|VC_A0858 hypothetical protein
8 1 8 0 36027_VC60A chr1:2540301-2540360 36027_VC60A CGCCTAGGCGGCTATTCCAACTCAGGTGAAGGTGGTGAAGATCCACGCCGCTTTGGCACT chr1:2540301-2540360 tigr_db|VC_2376 gltB-2 gltB-2 glutamate synthase, large subunit
9 1 9 0 14072_VC60A chr1:995880-995821 14072_VC60A GAAATCGTTCGCTGCCACGATCAACTCTGCGTTGTTATCACCTTCCAGATCGACCACGAT chr1:995880-995821_R tigr_db|VC_0930 hypothetical protein
10 1 10 0 36408_VC60A chr1:2567590-2567531 36408_VC60A CTGGAGCCGCGGTGGGTTGGTTCCCTGAACAAGAGTTAACACAAGAGAAAAACGATGACT chr1:2567590-2567531_R tigr_db|VC_2398 ftsA ftsA cell division protein FtsA
11 1 11 0 42147_VC60A chr2:9591-9650 42147_VC60A TCTGCGCGCGCGCGATATTACGCCACTGCAATTGGGAGAAGTGGTTGCACGCTTTATCTG chr2:9591-9650 tigr_db|VC_A0011 malT malT malT regulatory protein
12 1 12 0 53728_VC60A chr2:825430-825371 53728_VC60A TTTCCACAAAAATAAAAACGGTATAAAGACTTAGAATGATGGCGAGCGAAGTGATTAAGT chr2:825430-825371_R tigr_db|VC_A0872 cydA-2 cydA-2 cytochrome d ubiquinol oxidase, subunit I
13 1 13 0 44879_VC60A chr2:201811-201870 44879_VC60A GTCACAGATCACCGCTTTGCGTACCGCATCCAATAGGCGATGAAAACGCTCTTCGTTGTT chr2:201811-201870 tigr_db|VC_A0182 sigma-54 dependent transcriptional regulator
14 1 14 0 42760_VC60A chr2:52700-52641 42760_VC60A ACCATCATTCACATAACTTTGATAAAGATTCCAACTGCCCTCACGCTCAGAAGCGTAGAT chr2:52700-52641_R tigr_db|VC_A0044 tricorn protease, FRAMESHIFT
15 1 15 0 716_VC60A chr1:50320-50261 716_VC60A GCGTTTCATCGACATAAGGGCGCAACTGCGCATAGCTAGCGGCAATTAAGATCACCCCTT chr1:50320-50261_R tigr_db|VC_0054 Sua5/YciO/YrdC family protein
16 1 16 0 55127_VC60A chr2:924281-924340 55127_VC60A GACCAAACACAAAACGGTAATTATTTGCATTTGAGAATAAATTGCATTTAAATATCCCTT chr2:924281-924340 NA NA
17 1 17 0 15400_VC60A chr1:1089260-1089201 15400_VC60A CGAATAATTTCTACCCGTTCGACGGTATCAATGTCCGAGTGTAAATAGCGAACTTTCACA chr1:1089260-1089201_R tigr_db|VC_1018 uvrB uvrB excinuclease ABC subunit B, authentic frameshift
18 1 18 0 905_VC60A chr1:63561-63620 905_VC60A AGATGAGCTGATCCTGAACTTAGAAATCAACCAAGTGGATTTGGTGTTGGATTGTAGTGA chr1:63561-63620 tigr_db|VC_0063 thiF thiF adenylyltransferase ThiF
19 1 19 0 4451_VC60A chr1:314021-314080 4451_VC60A TTATAACCCGAACGGCAAAGTGATTCTCGGGGTGCGCAGAGTCGCCACCGGGCAAGTGCG chr1:314021-314080 tigr_db|VC_0303 sensor histidine kinase
20 1 20 0 39726_VC60A chr1:2800760-2800701 39726_VC60A GGTATCGTACTGGCGACGGGTGGTGGCTCAGTAATTAGTAAAGAGAACCGCAACCGACTG chr1:2800760-2800701_R tigr_db|VC_2629 aroK aroK shikimate kinase

Total number of rows: 62976

Table truncated, full table size 11582 Kbytes.




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