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Platform GPL21131 Query DataSets for GPL21131
Status Public on Nov 13, 2015
Title Agilent-079374 Synechocystis2015 075764
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Synechocystis sp. PCC 6803
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Copy of the SynCRISPR76 array, Tm 76, reverse complement probes

Arrays of this design have barcodes that begin with 16079374 or 2579374.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 12, 2015
Last update date Nov 13, 2015
Contact name Jens Georg
E-mail(s) [email protected]
Organization name University of Freiburg
Street address Schänzlestr. 1
City Freiburg
ZIP/Postal code 79104
Country Germany
 
Samples (51) GSM1938080, GSM1938081, GSM1938082, GSM1938083, GSM2200245, GSM2200246 
Series (6)
GSE74940 CO2-neutral isoprene production using the cyanobacterium Synechocystis sp. PCC 6803
GSE83363 Awaking from dormancy: Resuscitation of chlorotic Synechocystis sp. PCC 6803 cells reveals a highly orchestrated process
GSE185294 The impact of the carbon-regulation protein SbtB on CO2-dependent gene expression in Synechocystis sp. PCC 6803 [sbtB]

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 SYN-CR-76-1263 SYN-CR-76-1263 FALSE unmapped CGAGAAATGCAAGGTTATTGGTTTAGTCATCCCCTTTCAGAAGCAGAAATTAC
5 192 320 SYN-CR-76-40456 SYN-CR-76-40456 FALSE unmapped GATCATGGACCAAACATTTTTGCCATTGCGGCCGTAGAAATCCGTATAG
6 192 318 SYN-CR-76-18151 SYN-CR-76-18151 FALSE unmapped AGTCATAAATATAGTTTTCACTAATCCAATCATCATCTGCCAGCCACATGAAGTATTCTC
7 192 316 SYN-CR-76-26414 SYN-CR-76-26414 FALSE unmapped GACGAATCCGGCCAATTTCCTGGAGATAGATACGGATTGAGTCTTC
8 192 314 SYN-CR-76-50106 SYN-CR-76-50106 FALSE unmapped CTAATTACCAATCATCCTGGCGCTGGGGTCGGGGACTATCCCAATC
9 192 312 SYN-CR-76-57868 SYN-CR-76-57868 FALSE unmapped GACTCCGTTTGACCATTCCACGGACCCAGAAGCAACCTTTGCAGAG
10 192 310 SYN-CR-76-58867 SYN-CR-76-58867 FALSE unmapped GGCAATTTACCCCAGATGAGCAGATAGGCTACTTCGATAAAACTACTGG
11 192 308 SYN-CR-76-54703 SYN-CR-76-54703 FALSE unmapped CAGTTCCAGGGTCATGCCCTTGGGAATAAAGGCCCCAAAACTTTG
12 192 306 SYN-CR-76-32036 SYN-CR-76-32036 FALSE unmapped CCCAGATGCTTTTGTTAAAAGTCCCTGAAAAAGAATATTTACTTCCGATGATTCTGAAAA
13 192 304 SYN-CR-76-9505 SYN-CR-76-9505 FALSE unmapped CTCATTTAGCCCATGCTCTCCAGGGGAAAAGTGCCGTTATTTCTAC
14 192 302 SYN-CR-76-44982 SYN-CR-76-44982 FALSE unmapped GAATTTTCCGTGAACACCACCAAAAGATAGGGACTCTGGTGGGGAATTTCAATGTAG
15 192 300 SYN-CR-76-1784 SYN-CR-76-1784 FALSE unmapped GGTTTGTTCGGATCGCCGGCCGGGGGCGGGACATGGTGCAAAATCGCCTCAAACAAAG
16 192 298 SYN-CR-76-13515 SYN-CR-76-13515 FALSE unmapped GTATCGGTGACAATAAACTCAATTTCCGCTACCTGTTGCACCATCAAAG
17 192 296 SYN-CR-76-20561 SYN-CR-76-20561 FALSE unmapped CTTTCATCATTTGCAGAGACGCTTGCAACCCATACATTAGGTTGATGG
18 192 294 SYN-CR-76-25694 SYN-CR-76-25694 FALSE unmapped GTGATAAGAATCCTTTTACCCCGTAAATCTTCCTGACCTCCGGTGAAC
19 192 292 SYN-CR-76-29047 SYN-CR-76-29047 FALSE unmapped GAGGGTCAAAAAAATCTAGGCAAGTTAATAAAGATGTGGAGCTAATGCCCACTAC
20 192 290 SYN-CR-76-1270 SYN-CR-76-1270 FALSE unmapped CTAACCGAATTGTTCTTCCACTTCCAAGTCAAACAGCATCTTCAGGGAG

Total number of rows: 62976

Table truncated, full table size 6744 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL21131_079374_D_GEO_20151030.txt.gz 1.8 Mb (ftp)(http) TXT

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