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Platform GPL21414 Query DataSets for GPL21414
Status Public on Feb 01, 2017
Title Roche-NimbleGen-Slide-512049-A02
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Haloferax volcanii
Manufacturer Roche NimbleGen, Inc.
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name Slide-5120049-A02. NimbleGen design ID 512049, 12 x 135k arrays per slide. Gene expression design for 3,982 genes from Haloferax volcanii DS2 with 8 unique 60-mer probes per gene. Each probe is replicated 4 times per array. The design includes several types of control probes, including crosshybridization, random GC, synthesis, grid alignment, etc.
native array description file: 100916_Hvol_TP_exp.ndf
native array description file: 100916_Hvol_TP_exp.ngd
 
Submission date Feb 04, 2016
Last update date Feb 01, 2017
Contact name Amy K Schmid
E-mail(s) [email protected]
Organization name Duke University
Department Biology
Lab Schmid
Street address 125 Science Dr.
City Durham
State/province NC
ZIP/Postal code 27707
Country USA
 
Samples (18) GSM2054835, GSM2054836, GSM2054837, GSM2054838, GSM2054839, GSM2054840 
Series (2)
GSE77589 GlpR functions as a global DeoR-type regulator of metabolic gene transcription in the haloarchaeon Haloferax volcanii
GSE130934 Transcription analysis for the growth of Haloferax volcanii on L-alanine and ammonium chloride

Data table header descriptions
ID
ORF
GI
FUNCTION annotated function for each gene product

Data table
ID ORF GI FUNCTION
HVO_0001100300000001 HVO_0001 291372264 Orc1-type DNA replication protein
HVO_0002100300000002 HVO_0002 291370474 signal peptidase I
HVO_0003100300000003 HVO_0003 291371005 DNA polymerase D exonuclease subunit DP1
HVO_0004100300000004 HVO_0004 291372190 oxidoreductase, FAD/FMN-binding superfamily
HVO_0005100300000005 HVO_0005 291372621 metal transporter family GufA protein
HVO_0006100300000006 HVO_0006 291370555 conserved hypothetical protein
HVO_0007100300000008 HVO_0007 291371921 transformer-2 protein
HVO_0008100300000007 HVO_0008 291370134 aspartokinase
HVO_0009100300000009 HVO_0009 291372858 tryptophanase
HVO_0010100300000010 HVO_0010 291372446 Serine/Threonine protein phosphatase
HVO_0011100300000011 HVO_0011 291372715 IMP cyclohydrolase
HVO_0013100300000012 HVO_0013 291370852 Putative KEOPS complex component
HVO_0014100300000013 HVO_0014 291371821 ATP-dependent DNA helicase Hel308a
HVO_0015100300000014 HVO_0015 291372070 ferredoxin
HVO_0016100300000015 HVO_0016 291372370 conserved hypothetical protein
HVO_0017100300000016 HVO_0017 291370439 conserved hypothetical protein
HVO_0018100300000017 HVO_0018 291371447 conserved hypothetical protein
HVO_0019100300000018 HVO_0019 291371891 24-sterol C-methyltransferase
HVO_0020100300000019 HVO_0020 291372333 ABC-type transport system ATP-binding protein (probable substrate thiamine)
HVO_0021100300000020 HVO_0021 291372824 ABC-type transport system permease protein (probable substrate thiamine)

Total number of rows: 3985

Table truncated, full table size 288 Kbytes.




Download family Format
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Supplementary data files not provided
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