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Platform GPL22150 Query DataSets for GPL22150
Status Public on Aug 17, 2016
Title Nimblegen OID24708_Human, Design: 091105_HG18_AS_ChIP_HX1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Roche-Nimblegen
Manufacture protocol Roche-Nimblegen proprietary. The design of the arary was custom tiling design for repeat regions in the hg18 genome using TRF database sequences. Straight-tiling through the sequences using isothermal 50-75mers (target 76C) using an interval of 44 (2,137,330 probes). No uniqueness checking was performed as it was a repeat array. The sequence for any initial sequence that was smaller than 50 bases was extended with itself in tandem, so that it would be >=50. The design included two control sets composed of 29,161 random sequence tiles and 181 tiles from the rDNA locus of S. cerevisiae.
 
 
Submission date Jul 12, 2016
Last update date Aug 19, 2016
Contact name Alexander V. Strunnikov
E-mail(s) [email protected]
Organization name GIBH
Lab Molecular Epigenetics
Street address 190 Kai Yuan Avenue
City Guangzhou
State/province Guangdong
ZIP/Postal code 510530
Country China
 
Samples (12) GSM2231881, GSM2231882, GSM2231883, GSM2231884, GSM2231885, GSM2231886 
Series (1)
GSE84326 Human tandem repeat custom custom microarray ChIP-chip with anti-CTCF and anti-CTCFL/BORIS antibodies in K562 cell line

Data table header descriptions
ID
SEQUENCE

Data table
ID SEQUENCE
116927811FS000000001 AATGCCTGTACCACAATGCCTGTACCCCAATAATGCCTGTACCACAATGC
116927814FS000000003 TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
116927816FS000000001 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTGTCTGTCTG
116927817FS000000001 TATATATACGTATATATACATATGTACATACATATACGTGTATATATACATATATACATACATATACG
116927818FS000000001 TATATATATATACGTATATATACATATGTACATACATATACGTGTATATATA
116927819FS000000001 TATATATATATATACGTATATATACATATGTACATACATATACGTGTATATATACATATATACATACATA
116927820FS000000001 GTATATATACATATGTACATACATATACGTGTATATATACATATATACATACATATACGTGTATATATA
116927821FS000000001 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGT
116927822FS000000001 TATATATATGTATATATACACATATACATATATTATATATGTATATGTATATATACACATATACATATATATG
116927822FS000000045 ATGTATATATACACATATACATATATATGTATATGTGTATATATATTAGACAGATATATATGTATATAATA
116927824FS000000001 CACCTGAGGCCTGATGCGCACCTGGGGCCGAATGTCCCCCTCAGGGTGAA
116927825FS000000001 CCTGGGGCCTGATTGCCCACCCGGGGACTGGGTGTCCACCTGGGGTCTGA
116927826FS000000001 ATGTCCACCTGGGGCTGGATGTCGCCCAATGGCTAGATGTCCACCTGTGG
116927827FS000000001 GATGTTCACCTGGCGCCTGATGTCCACCTGGAGCCTGAGATGTTCACCTG
116927828FS000000001 CCTGGTATCCACCTGGGGCCTGGTATCCACCTAGGGCTTGATATTCACCT
116927829FS000000001 CTGGTGTCCACCTTGAGTGTGTGTATCCAACTGAGTGCTGGTGTCCACTG
116927830FS000000001 CAGGTGGATATCAGGCCACAGGTGAACACCAGGCCCCAGGTGGCAGGTGG
116927831FS000000001 TGAACACCAGGTTCCAAATGAACATCAGGCTCCAAGTGAACACACAGGCT
116927832FS000000001 CCAGGTGGATATCTGGCTGCAGGTGGACATCAGGCCCCAGGTGGACCAGG
116927833FS000000001 AGGCCCAAAGTGTACACCCATGCCCAGGTGGGCATCAGGCCCAAGGTGTA

Total number of rows: 2166672

Table truncated, full table size 162040 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL22150_091105_hg18_as_chip_hx1.ncd.gz 259 b (ftp)(http) NCD
GPL22150_091105_hg18_as_chip_hx1.ndf.gz 80.4 Mb (ftp)(http) NDF

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