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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 30, 2016 |
| Title |
20050609MD_PMC |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named "20050609MD_PMC"
Printer: Arrayer 250B
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 24
Spot Rows per Sector: 12
Column Spacing: 184
Row Spacing: 156
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 46
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100530 70_N_SSC_1
100513 HYBRIDSC_1
100514 HYBRIDSC_2
100515 HYBRIDSC_3
100516 HYBRIDSC_4
100517 HYBRIDSC_5
100518 HYBRIDSC_6
100519 HYBRIDSC_7
100520 HYBRIDSC_8
100521 HYBRIDSC_9
100522 HYBRIDSC_10
100523 HYBRIDSC_11
100524 HYBRIDSC_12
100525 HYBRIDSC_13
100526 HYBRIDSC_14
100527 HYBRIDSC_15
100528 HYBRIDSC_16
100529 HYBRIDSC_17
100500 HYBRIDSB_1
100501 HYBRIDSB_2
100502 HYBRIDSB_3
100503 HYBRIDSB_4
100504 HYBRIDSB_5
100505 HYBRIDSB_6
100506 HYBRIDSB_7
100507 HYBRIDSB_8
100508 HYBRIDSB_9
100509 HYBRIDSB_10
100510 HYBRIDSB_11
100511 HYBRIDSB_12
100512 HYBRIDSB_13
100528 HYBRIDSC_16
100525 HYBRIDSC_13
100524 HYBRIDSC_12
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| Description |
Dunham project-SCSB-1, a multi-organism print.
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| Submission date |
Sep 27, 2016 |
| Last update date |
Sep 30, 2016 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
[email protected]
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| Phone |
206-543-2338
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| Organization name |
University of Washington
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| Department |
Genome Sciences
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| Lab |
Dunham Lab
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| Street address |
Foege Building, S403B, Box 355065
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (27)
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GSM2330191, GSM2330194, GSM2330197, GSM2330198, GSM2330200, GSM2330203
GSM2330206, GSM2330207, GSM2330209, GSM2330210, GSM2330212, GSM2330213, GSM2330216, GSM2330219, GSM2330224, GSM2330225, GSM2330227, GSM2330228, GSM2330229, GSM2330230, GSM2330231, GSM2330232, GSM2495990, GSM2495991, GSM2495994, GSM2495995, GSM2495996
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| Series (2) |
| GSE87401 |
Differential paralog divergence modulates evolutionary outcomes in yeast |
| GSE95086 |
Loss of heterozygosity drives adaptation in hybrid yeast |
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| Data table header descriptions |
| ID |
feature/spot number |
| SPOT_ID |
clone identifier or gene name |
| ORGANISM |
the organism of the spotted sequence |
| ORF |
the systematic name of the open reading frame |
| GENE_NAME |
the published name or descripion of the gene product |
| SEQUENCE |
oligonucleotide sequence |
| Data table |
| ID |
SPOT_ID |
ORGANISM |
ORF |
GENE_NAME |
SEQUENCE |
| 1 |
70_N_40UM_SSC |
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| 2 |
3XSSC |
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| 3 |
EMPTY |
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| 4 |
EMPTY |
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| 5 |
EMPTY |
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| 6 |
EMPTY |
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| 7 |
EMPTY |
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| 8 |
EMPTY |
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| 9 |
YJL061W |
Saccharomyces cerevisiae |
YJL061W |
NUP82 |
CTTTTCAAAATATTTCAAGCGATATGAAACCGCAAAGCACCGCAGCTGAAACAAGTATCAGTACAGAAAA |
| 10 |
YML069W |
Saccharomyces cerevisiae |
YML069W |
POB3 |
GATTTTCTCAGGATGACTATAACTTAATCAAGAATGATTTCCATCGCCGTTTTAATATTCAGGTAGAGCA |
| 11 |
YDR153C |
Saccharomyces cerevisiae |
YDR153C |
ENT5 |
ATTTGCTTGACTGGGATGGCCCAAAGTCAGACACAGATACCACCGCTGCTGCGCAAACATCATTGCCCTT |
| 12 |
YLR352W |
Saccharomyces cerevisiae |
YLR352W |
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TTTTACTAAAAAAACTTTGTCAACATGGCCATAACAAAACTTTGCAATATCTAAATATCGGCGGTTTACC |
| 13 |
YNL224C |
Saccharomyces cerevisiae |
YNL224C |
SQS1 |
AAGGGAAGCAGACGTTTTTGAAGAACCAGGAAAGATGACTTCTGATGTTGAATATATTAACAATGAAGAC |
| 14 |
YAL046C |
Saccharomyces cerevisiae |
YAL046C |
AIM1 |
CTGAAGTGTGTAAAGTGCAAGACGTTTCCGGTGGCTGCGGATCCATGTTTGCTATCAACATAACAAGCAA |
| 15 |
YNL021W |
Saccharomyces cerevisiae |
YNL021W |
HDA1 |
TCTCTACTACTTCTAAAAGTAAAAGGCAGGTTATTGTTCCCGTTTGCATGCCAAAAATCCATTATTCACC |
| 16 |
YPL101W |
Saccharomyces cerevisiae |
YPL101W |
ELP4 |
TGCCGCTGGGAAACTCTGTACTAGTAGAGGAGCAGAGCACGACAGAATTTCACTCTATTCTCGGTAAACT |
| 17 |
YDR432W |
Saccharomyces cerevisiae |
YDR432W |
NPL3 |
GGGAAAATAGTTTAGAAACTACTTTTTCTAGCGTCAATACCAGAGATTTTGATGGTACCGGTGCTCTAGA |
| 18 |
YMR029C |
Saccharomyces cerevisiae |
YMR029C |
FAR8 |
TTTGTTTAGCACAGCCAACAAGCGTGAAAATAATGAAACAATATCCAAGATACACTCGGAATTGTCGAAA |
| 19 |
YER144C |
Saccharomyces cerevisiae |
YER144C |
UBP5 |
TACCCTTATACTATTCAGATTTGCCCATTATACCGCAACCAAGCCCCAACAGAAATTCTCCCACCGTTCA |
| 20 |
YNR020C |
Saccharomyces cerevisiae |
YNR020C |
ATP23 |
TAAGAGTTCTAATATCAAAATGATCAGAAGAGTAAGGCATAATTTGTACAACCAAAACCAAGGAAAGCTG |
Total number of rows: 13056
Table truncated, full table size 1465 Kbytes.
| Supplementary data files not provided |
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