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Platform GPL30399 Query DataSets for GPL30399
Status Public on Mar 10, 2022
Title Agilent Custom Mycobacterium smegmatis Whole Genome 8x15k GE Microarray (AMADID-43029)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycolicibacterium smegmatis
Manufacturer Agilent Technologies
Manufacture protocol www.chem.agilent.com
 
Description Agilent Genotypic Technology designed Custom Mycobacterium smegmatis Whole Genome 8x15k GE Microarray (AMADID-43029)
 
Submission date Jul 16, 2021
Last update date Mar 10, 2022
Contact name Genotypic technology
E-mail(s) [email protected]
Organization name Genotypic Technology
Street address 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE
City Bangalore
State/province Karnataka
ZIP/Postal code 560094
Country India
 
Samples (8) GSM5461195, GSM5461196, GSM5461197, GSM5461198, GSM5461199, GSM5461200 
Series (1)
GSE180348 Comparison of Transcription Profiles of M. smegmatis overexpressing wild type and phopshorylation defective PknK

Data table header descriptions
ID
Gene Symbol
Locus_Tag Locus_Tag
Description Gene Description
Probe Name Oligonucleotide probe ID
SEQUENCE Oligonucleotide Probe sequence

Data table
ID Gene Symbol Locus_Tag Description Probe Name SEQUENCE
accD accD MSMEG_2169 MSMEG_2169; Location: 2245536..2247044 (-); Length: 502; PID: 118467380; Gene: accD; COG: COG0777I; Product: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; NCBI GeneID: 4533851; Uniprot: A0QUD6; EC no.: ec:6.4.1.2; ko (Kegg Entry): ko:K01962 GTT_msm_specific_GE_012237 CGCACCTGCCCTATCTGGTGTACCTGCGCCATCCCACCACAGGTG
aceA aceA MSMEG_0911 MSMEG_0911; Location: 995201..996487 (+); Length: 428; PID: 118471509; Gene: aceA; COG: COG2224C; Product: isocitrate lyase; NCBI GeneID: 4536848; Uniprot: A0QQX6; EC no.: ec:4.1.3.1; ko (Kegg Entry): ko:K01637; Pathway: path:msm00630 msm01100; ko descrip GTT_msm_specific_GE_014830 ; GTT_msm_specific_GE_005282 CTACTACCAGGTGCGCGGCGGAATTCCGTACGCCATCGCCAAATC ; CACTGGGAAGATCAGCTGGCCTCGGAGAAGAAGTGCGGCCACCTC
aceE aceE MSMEG_4323 MSMEG_4323; Location: 4407679..4410468 (+); Length: 929; PID: 118470577; Gene: aceE; COG: COG2609C; Product: pyruvate dehydrogenase subunit E1; NCBI GeneID: 4531364; Uniprot: A0R0B0; EC no.: ec:1.2.4.1; ko (Kegg Entry): ko:K00163; Pathway: path:msm00010 m GTT_msm_specific_GE_004479 CACCTACGTCACGCTCGGTACCGACGGCTTCGGCTTCTCCGACAC
ackA ackA MSMEG_0784 MSMEG_0784; Location: 869653..870783 (+); Length: 376; PID: 118472723; Gene: ackA; COG: COG0282C; Product: acetate kinase; NCBI GeneID: 4531693; Uniprot: A0QQK1; EC no.: ec:2.7.2.1; ko (Kegg Entry): ko:K00925; Pathway: path:msm00430 msm00620 msm00640 msm0 GTT_msm_specific_GE_007178 CATCAAGCGCTACGGTTTTCATGGCACGTCGCACGAGTACGTCAG
acnA acnA MSMEG_3143 MSMEG_3143; Location: 3215760..3218591 (-); Length: 943; PID: 118471676; Gene: acnA; COG: COG1048C; Product: aconitate hydratase 1; NCBI GeneID: 4536477; Uniprot: A0QX20; EC no.: ec:4.2.1.3; ko (Kegg Entry): ko:K01681; Pathway: path:msm00020 msm00630 msm0 GTT_msm_specific_GE_004218 CACCATGGACTTCGACTTCGAGTCCGATCCGCTCGGCCAGGACAG
acpP acpP MSMEG_4326 MSMEG_4326; Location: 4413021..4413320 (+); PID: 118471527; Gene: acpP; COG: COG0236IQ; Product: acyl carrier protein; NCBI GeneID: 4537238; Uniprot: A0R0B3; ko (Kegg Entry): ko:K02078; DNA Type: Protein coding; Next best Hit: MSMEG_1216(alignment length GTT_msm_specific_GE_005581 CAGACCGAGGACAAGTACGGCGTGAAGATCCCGGACGAGGATCTG
acpS acpS MSMEG_4756 MSMEG_4756; Location: 4852549..4852941 (-); Length: 130; PID: 118472820; Gene: acpS; COG: COG0736I; Product: 4'-phosphopantetheinyl transferase; NCBI GeneID: 4536674; Uniprot: A0R1H6; EC no.: ec:2.7.8.7; ko (Kegg Entry): ko:K00997; Pathway: path:msm00770; GTT_msm_specific_GE_012716 CGGAAGGGATCCACCGCGACATCGAGGTGGTGACCGACATGTGGG
add add MSMEG_1676 MSMEG_1676; Location: 1768749..1769849 (+); Length: 366; PID: 118467725; Gene: add; COG: COG1816F; Product: adenosine deaminase; NCBI GeneID: 4534008; Uniprot: A0QT14; EC no.: ec:3.5.4.4; ko (Kegg Entry): ko:K01488; Pathway: path:msm00230 msm01100; ko des GTT_msm_specific_GE_004898 CACGGTCAACACCGACAACCGGTTGATGAGCGACACCACCATGAG
adk adk MSMEG_1484 MSMEG_1484; Location: 1576764..1577309 (+); Length: 181; PID: 118473144; Gene: adk; COG: COG0563F; Product: adenylate kinase; NCBI GeneID: 4531206; Uniprot: A0QSH8; EC no.: ec:2.7.4.3; ko (Kegg Entry): ko:K00939; Pathway: path:msm00230 msm01100 msm01110; GTT_msm_specific_GE_009485 CCGAGGGGTTCATCCTCGACGGCTACCCGCGCTCGGTCGAGCAGG
ahpD ahpD MSMEG_4890 MSMEG_4890; Location: 4987073..4987606 (-); Length: 177; PID: 118472169; Gene: ahpD; COG: COG2128S; Product: alkylhydroperoxidase, AhpD family protein; NCBI GeneID: 4535695; Uniprot: Q50441; ko (Kegg Entry): ko:K04756; DNA Type: Protein coding; Next best GTT_msm_specific_GE_001298 ATCATGGGGATGAACAACGTCTTCTACCGCACCAAGGGGCAGCTC
alaS alaS MSMEG_3025 MSMEG_3025; Location: 3096983..3099673 (+); Length: 896; PID: 118469604; Gene: alaS; COG: COG0013J; Product: alanyl-tRNA synthetase; NCBI GeneID: 4531109; Uniprot: A0QWQ4; EC no.: ec:6.1.1.7; ko (Kegg Entry): ko:K01872; Pathway: path:msm00970; ko descript GTT_msm_specific_GE_000498 ACACAGATAGAAGAGGTCACCAACCAGGCCGTCGAGGCCGACTAC
alc alc MSMEG_5727 MSMEG_5727; Location: 5810572..5811534 (+); Length: 320; PID: 118470580; Gene: alc; COG: COG4266F; Product: allantoicase; NCBI GeneID: 4531367; Uniprot: A0R472; EC no.: ec:3.5.3.4; ko (Kegg Entry): ko:K01477; Pathway: path:msm00230 msm01100; ko descriptio GTT_msm_specific_GE_001903 ATGAGTGAAACCCCACCCAATTTCACCTGGCTACCCGATCTGGCC
ald ald MSMEG_2659 MSMEG_2659; Location: 2740567..2741682 (-); Length: 371; PID: 118468812; Gene: ald; COG: COG0686E; Product: alanine dehydrogenase; NCBI GeneID: 4534068; Uniprot: A0QVQ8; EC no.: ec:1.4.1.1; ko (Kegg Entry): ko:K00259; Pathway: path:msm00250 msm00430; ko d GTT_msm_specific_GE_017005 CTGACCAACTCGACCATGCCGTACGTGCTCAAGCTCGCCGACAAG
algD algD MSMEG_5957 MSMEG_5957; Location: 6017397..6018887 (-); Length: 496; PID: 118468121; Gene: algD; COG: COG1004M; Product: GDP-mannose 6-dehydrogenase AlgD; NCBI GeneID: 4535208; Uniprot: A0R4U5; EC no.: ec:1.1.1.132; ko (Kegg Entry): ko:K00066; Pathway: path:msm00051 GTT_msm_specific_GE_031522 GGTGGACTACCAGGACGATCCTCGCTACATCGGCATCAGTTGGTG
alr alr MSMEG_1575 MSMEG_1575; Location: 1665708..1666877 (+); Length: 389; PID: 118472399; Gene: alr; COG: COG0787M; Product: alanine racemase; NCBI GeneID: 4531809; Uniprot: A0QSR6; EC no.: ec:5.1.1.1; ko (Kegg Entry): ko:K01775; Pathway: path:msm00473 msm01100; ko descri GTT_msm_specific_GE_006363 CAGGACTGGGCCGAACTGCTCGACACCATTCACTACGAGGTCGTC
amiF amiF MSMEG_3403 MSMEG_3403; Location: 3476015..3477016 (+); Length: 333; PID: 118470860; Gene: amiF; COG: COG0388R; Product: formamidase; NCBI GeneID: 4536792; Uniprot: A0QXS0; EC no.: ec:3.5.1.49; ko (Kegg Entry): ko:K01455; Pathway: path:msm00630 msm00910; ko descripti GTT_msm_specific_GE_005402 CAGAACAACATCTGGTCGCAGGGCGAGGCGATGGTCTGCGATGTC
ampC ampC MSMEG_3978 MSMEG_3978; Location: 4046936..4048078 (+); Length: 380; PID: 118473855; Gene: ampC; COG: COG1680V; Product: beta-lactamase; NCBI GeneID: 4533555; Uniprot: A0QZC8; EC no.: ec:3.5.2.6; ko (Kegg Entry): ko:K01467; Pathway: path:msm00311 msm01110 msm02020; k GTT_msm_specific_GE_006443 CAGGCAAAATCCGGCAGTACTCGAATCCCAGTGTCGGCCTGTTGG
amt amt MSMEG_2425 MSMEG_2425; Location: 2508282..2509631 (+); Length: 449; PID: 118470603; Gene: amt; COG: COG0004P; Product: ammonium transporter; NCBI GeneID: 4532106; Uniprot: A0QV27; ko (Kegg Entry): ko:K03320; DNA Type: Protein coding; Next best Hit: MSMEG_6759(alignm GTT_msm_specific_GE_005297 ; GTT_msm_specific_GE_020310 CACTGGGTTTTCGCGTTCGACGGCACGGTCACCGAGGATTCGGTC ; CTTTGCGTCGTGGCTGTTCGGCACCACCGAAGGCGATGACGGATC
anmK anmK MSMEG_0189 MSMEG_0189; Location: 212999..214165 (-); Length: 388; PID: 118467421; Gene: anmK; COG: COG2377O; Product: anhydro-N-acetylmuramic acid kinase; NCBI GeneID: 4536037; Uniprot: A0QNW7; EC no.: ec:2.7.1.-; ko (Kegg Entry): ko:K09001; DNA Type: Protein coding GTT_msm_specific_GE_003327 CAAGGAACACTTCCATCTGCCCTACCTGTTGCGGGCTCTCGATGG
araA araA MSMEG_1715 MSMEG_1715; Location: 1810894..1812399 (+); Length: 501; PID: 118469669; Gene: araA; COG: COG2160G; Product: L-arabinose isomerase; NCBI GeneID: 4535431; Uniprot: A0QT53; EC no.: ec:5.3.1.4; ko (Kegg Entry): ko:K01804; Pathway: path:msm00040 msm01100; ko GTT_msm_specific_GE_015940 CTCGACGACTTCGCCACCATCACCGGCACCGAACTGCTGCAGATC

Total number of rows: 6489

Table truncated, full table size 2284 Kbytes.




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