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Status |
Public on Apr 15, 2004 |
Title |
SHCZ |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Homo sapiens |
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Description |
Tip Configuration: Standard 48 tip Columns per Sector: 30 Rows per Sector: 30 Column Spacing: 146 Row Spacing: 146
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Submission date |
May 07, 2003 |
Last update date |
Apr 09, 2008 |
Contact name |
Jonathan Pollack |
E-mail(s) |
[email protected]
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Phone |
650-736-1987
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Organization name |
Stanford University
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Department |
Pathology
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Lab |
Pollack Lab
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Street address |
269 Campus Drive, CCSR3245A
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5176 |
Country |
USA |
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Samples (44)
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GSM6254, GSM6255, GSM6256, GSM6257, GSM6258, GSM6259
GSM6260, GSM6261, GSM6262, GSM6263, GSM6264, GSM6265, GSM6266, GSM6267, GSM6268, GSM6269, GSM6270, GSM6271, GSM6272, GSM6273, GSM6274, GSM6275, GSM6276, GSM6277, GSM6278, GSM6279, GSM6280, GSM6281, GSM6282, GSM6283, GSM6284, GSM6285, GSM6286, GSM6287, GSM6288, GSM6289, GSM6290, GSM6291, GSM6292, GSM6293, GSM6294, GSM6295, GSM6296, GSM6297
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Series (1) |
GSE425 |
Acute myeloid leukemia study |
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Data table header descriptions |
ID |
unique spot identifier |
NAME |
name of spot |
GENE_SYM |
gene symbol |
GENE_NAME |
gene name, description |
UNIGENE |
NCBI UniGene cluster identifier |
CLONE_ID |
cDNA clone identifier |
GB_ACC |
GenBank accession number |
SPOT_ID |
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PREFERRED_NAME |
preferred gene name |
GENE |
Entrez GENE ID |
SUID |
Stanford unique identifier |
SECTOR |
spot sector grid coordinate |
SECTORROW |
spot row grid coordinate |
SECTORCOL |
spot column grid coordinate |
SOURCE |
source |
PLATEID |
clone plate identifier |
PROW |
clone plate row |
PCOL |
clone plate column |
FAILED |
did PCR fail, 0 means one distinct band - success |
IS_VERIFIED |
is verified, default no (N) |
IS_CONTAMINATED |
is contaminated, default unknown (U) |
Data table |
ID |
NAME |
GENE_SYM |
GENE_NAME |
UNIGENE |
CLONE_ID |
GB_ACC |
SPOT_ID |
PREFERRED_NAME |
GENE |
SUID |
SECTOR |
SECTORROW |
SECTORCOL |
SOURCE |
PLATEID |
PROW |
PCOL |
FAILED |
IS_VERIFIED |
IS_CONTAMINATED |
1 |
13834 |
ITGB2 |
integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit) |
83968 |
IMAGE:342721 |
W68291 |
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|
3689 |
1 |
1 |
1 |
rgsv;[(384:gf200sv1prt2118_Ad1),(96:gf200sv4b1)] |
1 |
D |
1 |
0 |
N |
U |
500301 |
2 |
13846 |
IGFBP2 |
insulin-like growth factor binding protein 2, 36kDa |
433326 |
IMAGE:233721 |
H78560 |
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|
3485 |
1 |
1 |
2 |
rgsv;[(384:gf200sv1prt2118_Ad13),(96:gf200sv4b7)] |
1 |
D |
13 |
0 |
N |
U |
500307 |
3 |
13929 |
MTIF2 |
mitochondrial translational initiation factor 2 |
149894 |
IMAGE:50754 |
H18070 |
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|
4528 |
1 |
1 |
3 |
rgsv;[(384:gf200sv1prt2118_Ah1),(96:gf200sv4d1)] |
1 |
H |
1 |
0 |
N |
U |
500325 |
4 |
13941 |
HMBS |
hydroxymethylbilane synthase |
82609 |
IMAGE:126243 |
R06263 |
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3145 |
1 |
1 |
4 |
rgsv;[(384:gf200sv1prt2118_Ah13),(96:gf200sv4d7)] |
1 |
H |
13 |
0 |
N |
U |
500331 |
5 |
14025 |
GATA6 |
GATA binding protein 6 |
50924 |
IMAGE:234736 |
H77651 |
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2627 |
1 |
1 |
5 |
rgsv;[(384:gf200sv1prt2118_Al1),(96:gf200sv4f1)] |
1 |
L |
1 |
0 |
N |
U |
500349 |
6 |
14037 |
ICAM5 |
intercellular adhesion molecule 5, telencephalin |
151250 |
IMAGE:180864 |
R87763 |
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7087 |
1 |
1 |
6 |
rgsv;[(384:gf200sv1prt2118_Al13),(96:gf200sv4f7)] |
1 |
L |
13 |
0 |
N |
U |
500355 |
7 |
14121 |
SEMA3B |
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B |
82222 |
IMAGE:809892 |
AA455145 |
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|
7869 |
1 |
1 |
7 |
rgsv;[(384:gf200sv1prt2118_Ap1),(96:gf200sv4h1)] |
1 |
P |
1 |
0 |
N |
U |
500373 |
8 |
14133 |
RIN2 |
Ras and Rab interactor 2 |
62349 |
IMAGE:187147 |
R83223 |
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54453 |
1 |
1 |
8 |
rgsv;[(384:gf200sv1prt2118_Ap13),(96:gf200sv4h7)] |
1 |
P |
13 |
0 |
N |
U |
500379 |
9 |
18939 |
WT1 |
Wilms tumor 1 |
1145 |
IMAGE:503338 |
AA130187 |
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7490 |
1 |
1 |
9 |
rgsv;[(384:gf200sv16prt1230_Dd1),(96:gf201sv86b1)] |
2 |
D |
1 |
0 |
N |
U |
508173 |
10 |
18951 |
UNG2 |
uracil-DNA glycosylase 2 |
3041 |
IMAGE:769600 |
AA425900 |
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10309 |
1 |
1 |
10 |
rgsv;[(384:gf200sv16prt1230_Dd13),(96:gf201sv86b7)] |
2 |
D |
13 |
0 |
N |
U |
508179 |
11 |
19034 |
TIMP3 |
tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) |
245188 |
IMAGE:489519 |
AA099153 |
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|
7078 |
1 |
1 |
11 |
rgsv;[(384:gf200sv16prt1230_Dh1),(96:gf201sv86d1)] |
2 |
H |
1 |
0 |
N |
U |
508197 |
12 |
19046 |
TEGT |
testis enhanced gene transcript (BAX inhibitor 1) |
74637 |
IMAGE:884766 |
AA629591 |
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7009 |
1 |
1 |
12 |
rgsv;[(384:gf200sv16prt1230_Dh13),(96:gf201sv86d7)] |
2 |
H |
13 |
0 |
N |
U |
508203 |
13 |
19130 |
SMPD1 |
sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) |
77813 |
IMAGE:729964 |
AA416890 |
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6609 |
1 |
1 |
13 |
rgsv;[(384:gf200sv16prt1230_Dl1),(96:gf201sv86f1)] |
2 |
L |
1 |
0 |
N |
U |
508221 |
14 |
19142 |
SLC6A1 |
solute carrier family 6 (neurotransmitter transporter, GABA), member 1 |
22003 |
IMAGE:177967 |
H46254 |
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6529 |
1 |
1 |
14 |
rgsv;[(384:gf200sv16prt1230_Dl13),(96:gf201sv86f7)] |
2 |
L |
13 |
0 |
N |
U |
508227 |
15 |
19226 |
S100A8 |
S100 calcium binding protein A8 (calgranulin A) |
416073 |
IMAGE:562729 |
AA086471 |
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6279 |
1 |
1 |
15 |
rgsv;[(384:gf200sv16prt1230_Dp1),(96:gf201sv86h1)] |
2 |
P |
1 |
0 |
N |
U |
508245 |
16 |
19238 |
RPL36AL |
ribosomal protein L36a-like |
419465 |
IMAGE:884842 |
AA669359 |
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6166 |
1 |
1 |
16 |
rgsv;[(384:gf200sv16prt1230_Dp13),(96:gf201sv86h7)] |
2 |
P |
13 |
0 |
N |
U |
508251 |
17 |
19682 |
COPEB |
core promoter element binding protein |
285313 |
IMAGE:510381 |
AA055584 |
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CPBP=CBA1=DNA-binding protein |
1316 |
1 |
1 |
17 |
rgsv;[(384:gf201sv89prt1231_Dd1),(96:gf201sv92b1)] |
3 |
D |
1 |
2 |
N |
U |
508749 |
18 |
19694 |
CX3CL1 |
chemokine (C-X3-C motif) ligand 1 |
80420 |
IMAGE:140574 |
R66139 |
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CX3C chemokine=orthologue of mouse fractalkine |
6376 |
1 |
1 |
18 |
rgsv;[(384:gf201sv89prt1231_Dd13),(96:gf201sv92b7)] |
3 |
D |
13 |
0 |
N |
U |
508755 |
19 |
19778 |
PIP5K1A |
phosphatidylinositol-4-phosphate 5-kinase, type I, alpha |
149255 |
IMAGE:293950 |
N64014 |
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|
8394 |
1 |
1 |
19 |
rgsv;[(384:gf201sv89prt1231_Dh1),(96:gf201sv92d1)] |
3 |
H |
1 |
0 |
N |
U |
508773 |
20 |
19790 |
PPP1R8 |
protein phosphatase 1, regulatory (inhibitor) subunit 8 |
356590 |
IMAGE:278650 |
N66208 |
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5511 |
1 |
1 |
20 |
rgsv;[(384:gf201sv89prt1231_Dh13),(96:gf201sv92d7)] |
3 |
H |
13 |
0 |
N |
U |
508779 |
Total number of rows: 43008
Table truncated, full table size 6899 Kbytes.
Supplementary data files not provided |
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