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Platform GPL318 Query DataSets for GPL318
Status Public on Apr 15, 2004
Title SHCZ
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description Tip Configuration: Standard 48 tip
Columns per Sector: 30
Rows per Sector: 30
Column Spacing: 146
Row Spacing: 146
 
Submission date May 07, 2003
Last update date Apr 09, 2008
Contact name Jonathan Pollack
E-mail(s) [email protected]
Phone 650-736-1987
Organization name Stanford University
Department Pathology
Lab Pollack Lab
Street address 269 Campus Drive, CCSR3245A
City Stanford
State/province CA
ZIP/Postal code 94305-5176
Country USA
 
Samples (44) GSM6254, GSM6255, GSM6256, GSM6257, GSM6258, GSM6259 
Series (1)
GSE425 Acute myeloid leukemia study

Data table header descriptions
ID unique spot identifier
NAME name of spot
GENE_SYM gene symbol
GENE_NAME gene name, description
UNIGENE NCBI UniGene cluster identifier
CLONE_ID cDNA clone identifier
GB_ACC GenBank accession number
SPOT_ID
PREFERRED_NAME preferred gene name
GENE Entrez GENE ID
SUID Stanford unique identifier
SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
SOURCE source
PLATEID clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED did PCR fail, 0 means one distinct band - success
IS_VERIFIED is verified, default no (N)
IS_CONTAMINATED is contaminated, default unknown (U)

Data table
ID NAME GENE_SYM GENE_NAME UNIGENE CLONE_ID GB_ACC SPOT_ID PREFERRED_NAME GENE SUID SECTOR SECTORROW SECTORCOL SOURCE PLATEID PROW PCOL FAILED IS_VERIFIED IS_CONTAMINATED
1 13834 ITGB2 integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit) 83968 IMAGE:342721 W68291 3689 1 1 1 rgsv;[(384:gf200sv1prt2118_Ad1),(96:gf200sv4b1)] 1 D 1 0 N U 500301
2 13846 IGFBP2 insulin-like growth factor binding protein 2, 36kDa 433326 IMAGE:233721 H78560 3485 1 1 2 rgsv;[(384:gf200sv1prt2118_Ad13),(96:gf200sv4b7)] 1 D 13 0 N U 500307
3 13929 MTIF2 mitochondrial translational initiation factor 2 149894 IMAGE:50754 H18070 4528 1 1 3 rgsv;[(384:gf200sv1prt2118_Ah1),(96:gf200sv4d1)] 1 H 1 0 N U 500325
4 13941 HMBS hydroxymethylbilane synthase 82609 IMAGE:126243 R06263 3145 1 1 4 rgsv;[(384:gf200sv1prt2118_Ah13),(96:gf200sv4d7)] 1 H 13 0 N U 500331
5 14025 GATA6 GATA binding protein 6 50924 IMAGE:234736 H77651 2627 1 1 5 rgsv;[(384:gf200sv1prt2118_Al1),(96:gf200sv4f1)] 1 L 1 0 N U 500349
6 14037 ICAM5 intercellular adhesion molecule 5, telencephalin 151250 IMAGE:180864 R87763 7087 1 1 6 rgsv;[(384:gf200sv1prt2118_Al13),(96:gf200sv4f7)] 1 L 13 0 N U 500355
7 14121 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 82222 IMAGE:809892 AA455145 7869 1 1 7 rgsv;[(384:gf200sv1prt2118_Ap1),(96:gf200sv4h1)] 1 P 1 0 N U 500373
8 14133 RIN2 Ras and Rab interactor 2 62349 IMAGE:187147 R83223 54453 1 1 8 rgsv;[(384:gf200sv1prt2118_Ap13),(96:gf200sv4h7)] 1 P 13 0 N U 500379
9 18939 WT1 Wilms tumor 1 1145 IMAGE:503338 AA130187 7490 1 1 9 rgsv;[(384:gf200sv16prt1230_Dd1),(96:gf201sv86b1)] 2 D 1 0 N U 508173
10 18951 UNG2 uracil-DNA glycosylase 2 3041 IMAGE:769600 AA425900 10309 1 1 10 rgsv;[(384:gf200sv16prt1230_Dd13),(96:gf201sv86b7)] 2 D 13 0 N U 508179
11 19034 TIMP3 tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) 245188 IMAGE:489519 AA099153 7078 1 1 11 rgsv;[(384:gf200sv16prt1230_Dh1),(96:gf201sv86d1)] 2 H 1 0 N U 508197
12 19046 TEGT testis enhanced gene transcript (BAX inhibitor 1) 74637 IMAGE:884766 AA629591 7009 1 1 12 rgsv;[(384:gf200sv16prt1230_Dh13),(96:gf201sv86d7)] 2 H 13 0 N U 508203
13 19130 SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) 77813 IMAGE:729964 AA416890 6609 1 1 13 rgsv;[(384:gf200sv16prt1230_Dl1),(96:gf201sv86f1)] 2 L 1 0 N U 508221
14 19142 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 22003 IMAGE:177967 H46254 6529 1 1 14 rgsv;[(384:gf200sv16prt1230_Dl13),(96:gf201sv86f7)] 2 L 13 0 N U 508227
15 19226 S100A8 S100 calcium binding protein A8 (calgranulin A) 416073 IMAGE:562729 AA086471 6279 1 1 15 rgsv;[(384:gf200sv16prt1230_Dp1),(96:gf201sv86h1)] 2 P 1 0 N U 508245
16 19238 RPL36AL ribosomal protein L36a-like 419465 IMAGE:884842 AA669359 6166 1 1 16 rgsv;[(384:gf200sv16prt1230_Dp13),(96:gf201sv86h7)] 2 P 13 0 N U 508251
17 19682 COPEB core promoter element binding protein 285313 IMAGE:510381 AA055584 CPBP=CBA1=DNA-binding protein 1316 1 1 17 rgsv;[(384:gf201sv89prt1231_Dd1),(96:gf201sv92b1)] 3 D 1 2 N U 508749
18 19694 CX3CL1 chemokine (C-X3-C motif) ligand 1 80420 IMAGE:140574 R66139 CX3C chemokine=orthologue of mouse fractalkine 6376 1 1 18 rgsv;[(384:gf201sv89prt1231_Dd13),(96:gf201sv92b7)] 3 D 13 0 N U 508755
19 19778 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 149255 IMAGE:293950 N64014 8394 1 1 19 rgsv;[(384:gf201sv89prt1231_Dh1),(96:gf201sv92d1)] 3 H 1 0 N U 508773
20 19790 PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8 356590 IMAGE:278650 N66208 5511 1 1 20 rgsv;[(384:gf201sv89prt1231_Dh13),(96:gf201sv92d7)] 3 H 13 0 N U 508779

Total number of rows: 43008

Table truncated, full table size 6899 Kbytes.






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