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Platform GPL32909 Query DataSets for GPL32909
Status Public on Dec 02, 2022
Title InfiniumOmni2-5-8v1-5_A1
Technology type spotted oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina
Manufacture protocol See manufacturer's website
 
 
Submission date Dec 02, 2022
Last update date Dec 02, 2022
Contact name GEO admin
E-mail(s) [email protected]
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (31) GSM6781635, GSM6781636, GSM6781637, GSM6781638, GSM6781639, GSM6781640 
Series (1)
GSE219272 Study of variants associated with Fuchs corneal endothelial dystrophy cases without expansion of CTG18.1 repeats

Data table header descriptions
ID Name of the probe with added alphabetic and numeric characters to denote: Genome Build, Top/Bottom (T/B) and Forward/Reverse (F/R) strand designations, probe ID used internally by Illumina. Genome Build is zero if unknown. For indels, Plus/Minus is reported instead of Top/Bottom.
SNP_Name Name of the probe.
IlmnStrand The Top/Bot (for SNPs) or Plus/Minus (for Indels) designation of the ILMN strand (Design strand).
SNP SNP alleles as reported by assay probes. Alleles on the Design strand (the ILMN strand) are listed in order of Allele A/B.
AddressA_ID For Infinium II bead types, the Address ID for the probe used for both A and B alleles (in this case, AddressB_ID and AlleleB_ProbeSeq columns are empty).
AlleleA_ProbeSeq The sequence of the probe identified in AddressA_ID column.
AddressB_ID Address ID for the probe specific for the B allele (for Infinium II bead types, AddressB_ID column is empty).
AlleleB_ProbeSeq The sequence of the probe identified in AddressB_ID column (for Infinium II bead types, AlleleB_ProbeSeq column is empty).
GenomeBuild The NCBI Genome Build referenced for information about this probe in this annotation file.
Chr Chromosome containing the SNP.
MapInfo Chromosomal coordinates of the SNP.
Ploidy Ploidy of the target organism. For humans, autosomes are diploid, mitochondria and Y chromosome are monoploid.
Species Species targeted by the probes in this BeadArray.
Source The database source of the SNP, if available.
SourceVersion The database (Source) version, if available, which was referenced for the SNP to create the annotation file.
SourceStrand The Top/Bot (for SNPs) or Plus/Minus (for Indels) designation for the Source strand.
SourceSeq The sequence of the Source strand.
TopGenomicSeq The sequence of the Top strand (for SNPs) or the Plus strand (for Indels).
BeadSetID An identifier used in the manufacture of BeadChips.
Exp_Clusters The number of clusters expected to be generated by each SNP: 1 for nonpolymorphic probes, 2 for mitochondrial DNA and Y chromosome loci, 3 for any other loci for a diploid organism.
RefStrand Plus/Minus (+/-) designation for the ILMN strand.

Data table
ID SNP_Name IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand
200610-1-0_B_R_1867864656 200610-1 BOT [T/C] 9803928 TTTTTAATGCAGGTTTGGTAGTTTAGGACCTGTGGGTTTGTTAGGTACTG 37 MT 2755 diploid Homo sapiens BGI 0 TOP GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT 791 2 -
200610-10-0_B_R_1867864658 200610-10 BOT [T/C] 21792978 TCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACCC 37 0 0 diploid Homo sapiens BGI 0 TOP TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC 791 3 +
200610-100-0_B_R_1867864660 200610-100 BOT [T/C] 69608915 TCTGTCCCAATGTATGGGATGGCGGATAGTAAGTTTGTAATTACTGTGGC 37 MT 15172 diploid Homo sapiens BGI 0 TOP CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC 822 2 -
200610-102-0_T_R_1867864662 200610-102 TOP [A/G] 40640294 TGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT 37 MT 125 diploid Homo sapiens BGI 0 BOT TTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAG[T/C]ATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTA TAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT[A/G]CTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCATACCCCCCAGACGAAAATACCAA 791 2 -
200610-105-0_T_R_1867864667 200610-105 TOP [A/G] 86686956 TGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT 37 MT 236 diploid Homo sapiens BGI 0 BOT CTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAA[T/C]AATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCA TGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT[A/G]TTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAG 791 2 -
200610-107-0_B_F_1867864670 200610-107 BOT [T/C] 22767164 ACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC 37 MT 482 diploid Homo sapiens BGI 0 BOT TATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC[T/C]CATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCA TGGTTCGGGGTATGGGGTTAGCAGCGGTGTGTGTGTGCTGGGTAGGATGGGCGGGGGTTGTATTGATG[A/G]GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGTGACTGTTAAAAGTGCATACCGCCAAAAGATA 791 2 +
200610-108-0_T_R_1867864673 200610-108 TOP [A/G] 33808890 AGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG 37 0 0 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACC[T/C]CAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTG CACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG[A/G]GGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 822 3 +
200610-109-0_T_R_1867864675 200610-109 TOP [A/G] 69779106 CTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG 37 0 0 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA[T/C]CAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGG CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG[A/G]TTTAACTGTTGAGGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 791 3 +
200610-110-0_T_R_1867864679 200610-110 TOP [A/G] 40662251 GTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT 37 MT 3027 diploid Homo sapiens BGI 0 BOT ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTAT[T/C]AAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT AGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT[A/G]ATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAAT 791 2 -
200610-111-0_B_F_1867864680 200610-111 BOT [T/C] 14643828 CTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA 37 MT 3396 diploid Homo sapiens BGI 0 BOT CTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA[T/C]ATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCC GGGTTGTAGTAGCCCGTAGGGGCCTACAACGTTGGGGCCTTTGCGTAGTTGTAT[A/G]TAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATTGCGATTAGAATGGGTACAATGAG 791 2 +
200610-112-0_T_R_1867864683 200610-112 TOP [A/G] 96667148 TCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA 37 MT 3644 diploid Homo sapiens BGI 0 BOT CTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCG[T/C]TTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCG CGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA[A/G]CGGCTAGGCTAGAGGTGGCTAGAATAAATAGGAGGCCTAGGTTGAGGTTGACCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGAG 791 2 -
200610-113-0_T_R_1867864685 200610-113 TOP [A/G] 60803959 ATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTA 37 MT 3645 diploid Homo sapiens BGI 0 BOT TCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGT[T/C]TACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCG CGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTA[A/G]ACGGCTAGGCTAGAGGTGGCTAGAATAAATAGGAGGCCTAGGTTGAGGTTGACCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGA 791 2 -
200610-114-0_B_F_1867864686 200610-114 BOT [T/C] 6654908 GTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGA 37 MT 3826 diploid Homo sapiens BGI 0 BOT ATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGA[T/C]TACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTC GAAGGGGGTTCGGTTGGTCTCTGCTAGTGTGGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTA[A/G]TCAGAGGTGTTCTTGTGTTGTGATAAGGGTGGAGAGGTTAAAGGAGCCACTTATTAGTAATGTTGATAGTAGAAT 791 2 +
200610-115-0_T_R_1867864689 200610-115 TOP [A/G] 52655970 GTGTAGAGTTCAGGGGAGAGTGCGTCATATGTTGTTCCTAGGAAGATTGT 37 MT 4023 diploid Homo sapiens BGI 0 BOT TATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCAC[T/C]ACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACT AGTAGGGTCTTGGTGACAAAATATGTTGTGTAGAGTTCAGGGGAGAGTGCGTCATATGTTGTTCCTAGGAAGATTGT[A/G]GTGGTGAGGGTGTTTATTATAATAATGTTTGTGTATTCGGCTATGAAGAATA 791 2 -
200610-116-0_T_R_1867864691 200610-116 TOP [A/G] 99735592 GGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATCATA 37 0 0 diploid Homo sapiens BGI 0 BOT GCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTC[T/C]TATGATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTA TAGGGTGAGTGGTAGGAAGTTTTTTCATAGGAGGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATCATA[A/G]GAACAGGGAGGTTAGAAGTAGGGTCTTGGTGACAAAATATGTTGTGTAGAGTTCAGGGGAGAGTGC 791 3 +
200610-118-0_B_F_1867864694 200610-118 BOT [T/C] 80666840 GTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTA 37 0 0 diploid Homo sapiens BGI 0 BOT TGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTA[T/C]TTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAAC GTTGAAGAGGATAGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAA[A/G]TACTTGATGGCAGCTTCTGTGGAACGAGGGTTTATTTTTTTGGTTAGAACTGGAATAAAAGCTAGCA 791 3 +
200610-120-0_T_R_1867864701 200610-120 TOP [A/G] 75650149 AGTAGTAGGGTCGTGGTGCTGGAGTTTAAGTTGAGTAGTAGGAATGCGGT 37 MT 5108 diploid Homo sapiens BGI 0 BOT ACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTAC[T/C]ACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAG CTTGTTTCAGGTGCGAGATAGTAGTAGGGTCGTGGTGCTGGAGTTTAAGTTGAGTAGTAGGAATGCGGT[A/G]GTAGTTAGGATAATATAAATAGTTAAATTAAGAATGGTTATGTTAGGGTTGTACGGT 822 2 -
200610-121-0_B_F_1867864702 200610-121 BOT [T/C] 14616883 AACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATC 37 MT 6248 diploid Homo sapiens BGI 0 BOT TGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATC[T/C]GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAGGGAACTACTCCC GGGAGTAGTTCCCTGCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGC[A/G]GATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAACGCCA 791 2 +
200610-122-0_T_R_1867864705 200610-122 TOP [A/G] 81803919 GGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCCTAAGAT 37 MT 6374 diploid Homo sapiens BGI 0 BOT CAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTC[T/C]ATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAAC GTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCCTAAGAT[A/G]GAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGGAGTAGTTCCCTG 791 2 -
200610-123-0_B_F_1867864706 200610-123 BOT [T/C] 35609928 ATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAA 37 MT 6392 diploid Homo sapiens BGI 0 BOT CCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAA[T/C]TTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAAT ATTAGGACGGATCAGACGAAGAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAA[A/G]TTGATGGCCCCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGG 822 2 +

Total number of rows: 2380364

Table truncated, full table size 992333 Kbytes.




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