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Platform GPL34511 Query DataSets for GPL34511
Status Public on Nov 25, 2024
Title Illumina Custom Human Imprintome array
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
Description Custom methylation array containing 22,819 probes.
 
Submission date May 21, 2024
Last update date Nov 26, 2024
Contact name Dereje Jima
E-mail(s) [email protected]
Organization name NCSU
Department CHHE
Street address 850 Main Campus Drive
City RALEIGH
State/province NC
ZIP/Postal code 27606
Country USA
 
Samples (66) GSM8285481, GSM8285482, GSM8285483, GSM8285484, GSM8285485, GSM8285486 
Series (3)
GSE268073 Creation and Validation of the First Infinium DNA Methylation Array for the Human Imprintome [blood_imprintome]
GSE268074 Creation and Validation of the First Infinium DNA Methylation Array for the Human Imprintome [cord_blood]
GSE268075 Creation and Validation of the First Infinium DNA Methylation Array for the Human Imprintome [brain]

Data table header descriptions
ID
SPOT_ID
Name
U
AlleleA_ProbeSeq
M
AlleleB_ProbeSeq
Next_Base
COLOR_CHANNEL
col
Probe_Type
Strand_FR
Strand_TB
Strand_CO
Infinium_Design
Infinium_Design_Type
CHR
MAPINFO
Species
Genome_Build
Source_Seq
Forward_Sequence
Top_Sequence
Rep_Num

Data table
ID SPOT_ID Name U AlleleA_ProbeSeq M AlleleB_ProbeSeq Next_Base COLOR_CHANNEL col Probe_Type Strand_FR Strand_TB Strand_CO Infinium_Design Infinium_Design_Type CHR MAPINFO Species Genome_Build Source_Seq Forward_Sequence Top_Sequence Rep_Num
cg14600908_BO11 cg14600908_BO11 cg14600908 8695867 AGTTTAGTTTTTAAATTGTATATGAAAGTATTTGTATTTATGTGGGTTTT 45756976 AGTTTAGTTTTTAAATCGTATATGAAAGTATTTGTATTTATGTGGGTTTC A Red R cg F B O 1 I chr10 5645631 Human GRCh38 GCTCAGCTCTCAAACCGCACATGAAAGCACCTGCACTCATGTGGGCCCCG CTCTGCCTCACAGCTCAGCTCTCAAACCGCACATGAAAGCACCTGCACTCATGTGGGCCC[CG]ACTGGTTCAATCCCTCTCCCCTCTCCACAGTAACTGGTTCAAATGATCCAGGCTTGAGCC GGCTCAAGCCTGGATCATTTGAACCAGTTACTGTGGAGAGGGGAGAGGGATTGAACCAGT[CG]GGGCCCACATGAGTGCAGGTGCTTTCATGTGCGGTTTGAGAGCTGAGCTGTGAGGCAGAG 1
cg14636187_BC11 cg14636187_BC11 cg14636187 61671839 CCTAAAAAATAAATAATACCTACAAAAATCAAATAACCACCATAAAAACA 86655531 CCTAAAAAATAAATAATACCTACGAAAATCAAATAACCGCCGTAAAAACG A Red R cg F B C 1 I chr10 8296350 Human GRCh38 CCTGGGAAGTGGATGATGCCTGCGGGGGTCAGATGACCGCCGTGGGGGCG GTGAGGGAGCCACCTGGGAAGTGGATGATGCCTGCGGGGGTCAGATGACCGCCGTGGGGG[CG]GAGCAGTGCAATCCCTTCCCTCACCCATTGTAAGAGTCGCAGCCAGCTCTCCTGTAACAA TTGTTACAGGAGAGCTGGCTGCGACTCTTACAATGGGTGAGGGAAGGGATTGCACTGCTC[CG]CCCCCACGGCGGTCATCTGACCCCCGCAGGCATCATCCACTTCCCAGGTGGCTCCCTCAC 1
cg14654363_BC11 cg14654363_BC11 cg14654363 81738131 CAAACAAACCAATAAAAAAAACCACATAAATAAATTAAAACCAAACAACA 79686859 CAAACAAACCAATAAAAAAAACCGCGTAAATAAATTAAAACCAAACGACG C Grn G cg F B C 1 I chr6 28633666 Human GRCh38 CAGGCAAGCCAATGGGAGGGACCGCGTGAGTGGGTTGAGGCCAAGCGGCG GTGAGATAAAGCCAGGCAAGCCAATGGGAGGGACCGCGTGAGTGGGTTGAGGCCAAGCGG[CG]CGAGCTCCAGAGCTGGTGAGGCAGCTGGTTTGCGCTGGAGCCCCAGCCACGAGGAGGCCC GGGCCTCCTCGTGGCTGGGGCTCCAGCGCAAACCAGCTGCCTCACCAGCTCTGGAGCTCG[CG]CCGCTTGGCCTCAACCCACTCACGCGGTCCCTCCCATTGGCTTGCCTGGCTTTATCTCAC 1
cg14688113_TC11 cg14688113_TC11 cg14688113 58654226 TTCCAAATAAACATAAACTTAAAAAACCCCACACTCAAAACAAACAACCA 86752392 TTCCGAATAAACGTAAACTTAAAAAACCCCGCACTCAAAACAAACGACCG A Red R cg F T C 1 I chr2 163026378 Human GRCh38 CGGCCGTCTGCTCTGAGTGCGGGGCCCCCCAAGCCCACGCCCACCCGGAA GGCCAGCTGGAGTTCCGGGTGGGCGTGGGCTTGGGGGGCCCCGCACTCAGAGCAGACGGC[CG]GCCCTGCCGGCCCTGGGCAATGAGGGGCTTAGCACCCGGGCCAGCGGCTGCGGAGGGTGT GGCCAGCTGGAGTTCCGGGTGGGCGTGGGCTTGGGGGGCCCCGCACTCAGAGCAGACGGC[CG]GCCCTGCCGGCCCTGGGCAATGAGGGGCTTAGCACCCGGGCCAGCGGCTGCGGAGGGTGT 1
cg14688756_BC11 cg14688756_BC11 cg14688756 88687158 AAATCCAAACCAAACCCTTCCTACTCCCTCTAAAAATCAAAATAACAACA 13757824 AAATCCAAACCGAACCCTTCCTACTCCCTCTAAAAATCAAAATAACGACG A Red R cg R B C 1 I chr10 13158613 Human GRCh38 AAGTCCAAGCCGAGCCCTTCCTGCTCCCTCTAGGAATCAAAATGGCGGCG GCCGCCGCCCTCTCCTCTCCTGTCAGTGGCTCAGGCTCCGGGACTGCTCCAGTTTTCCCT[CG]CCGCCATTTTGATTCCTAGAGGGAGCAGGAAGGGCTCGGCTTGGACTTTTTGTGTTTTTT GCCGCCGCCCTCTCCTCTCCTGTCAGTGGCTCAGGCTCCGGGACTGCTCCAGTTTTCCCT[CG]CCGCCATTTTGATTCCTAGAGGGAGCAGGAAGGGCTCGGCTTGGACTTTTTGTGTTTTTT 1
cg14728235_TC11 cg14728235_TC11 cg14728235 9643136 AACAAACCAACTTCTCAATATATACCTAAAAAAATAAATCAAAAATCCCA 74760573 AACAAACCGACTTCTCGATATATACCTAAAAAAATAAATCGAAAATCCCG A Red R cg F T C 1 I chr20 58840122 Human GRCh38 CGGGACCTCCGATCCATCCTCTTAGGCACACACCGAGAAGCCGGCCTGCC GCAGAGCCAGAGGGCAGGCCGGCTTCTCGGTGTGTGCCTAAGAGGATGGATCGGAGGTCC[CG]GGCTCAGCAGTGGCGCCGAGCTCGCCATAATTACAACGACCTGTGCCCGCCCATAGGCCG GCAGAGCCAGAGGGCAGGCCGGCTTCTCGGTGTGTGCCTAAGAGGATGGATCGGAGGTCC[CG]GGCTCAGCAGTGGCGCCGAGCTCGCCATAATTACAACGACCTGTGCCCGCCCATAGGCCG 1
cg14803515_BC11 cg14803515_BC11 cg14803515 97771530 TTAAAAAACTTTATTAAAAACTTAAAAAAAAACTCCACAACAACCAACCA 35666179 TTAAAAAACTTTATTAAAAACTTAAAAAAAAACTCCACGACAACCAACCG A Red R cg F B C 1 I chr10 24520175 Human GRCh38 TTGGAAGACTTTGTTGAAGACTTGAAGAAGGACTCCACGGCAGCCAGCCG TCCCGCAGCGAGTTGGAAGACTTTGTTGAAGACTTGAAGAAGGACTCCACGGCAGCCAGC[CG]ATTGGTTACTCTGAAAGACGTGGAAGACGGGGCTTTCCTCCTGCGTCAAGTGGGAGAGGC GCCTCTCCCACTTGACGCAGGAGGAAAGCCCCGTCTTCCACGTCTTTCAGAGTAACCAAT[CG]GCTGGCTGCCGTGGAGTCCTTCTTCAAGTCTTCAACAAAGTCTTCCAACTCGCTGCGGGA 1
cg14825711_TC11 cg14825711_TC11 cg14825711 52723172 ACCTACACCTTTACTAACTACCCACTCATAAATATCAAAACCACAAAACA 92628413 ACCTACGCCTTTACTAACTACCCACTCATAAATATCAAAACCGCAAAACG A Red R cg F T C 1 I chr10 26946413 Human GRCh38 CGTTCTGCGGCTCTGACATCTATGAGTGGGCAGCCAGCAAAGGCGCAGGC CTCTGTGCTGGGGCCTGCGCCTTTGCTGGCTGCCCACTCATAGATGTCAGAGCCGCAGAA[CG]GCTCCGCAGAAGCCCTGCGCAGGCCCTGCCTGGGGCTGGCTTTGGTGCACATGTGACAAG CTCTGTGCTGGGGCCTGCGCCTTTGCTGGCTGCCCACTCATAGATGTCAGAGCCGCAGAA[CG]GCTCCGCAGAAGCCCTGCGCAGGCCCTGCCTGGGGCTGGCTTTGGTGCACATGTGACAAG 1
cg14830888_BC11 cg14830888_BC11 cg14830888 60674269 ACAAAAATCAACAAACTAAACAACACAATACAAAATCTACACATAACACA 99776118 ACAAAAATCAACAAACTAAACGACGCGATACAAAATCTACGCGTAACGCG A Red R cg R B C 1 I chr10 27413523 Human GRCh38 GCAGAAGTCAGCAAACTGGACGGCGCGGTGCAGGATCTGCGCGTGGCGCG ACGCAGAGCGCCCTGTACCTCGCGCACACCTGCTGGTACTGGATCTGGCTTCCCTTTTCC[CG]CGCCACGCGCAGATCCTGCACCGCGCCGTCCAGTTTGCTGACTTCTGCAAAGGTAGCTGG ACGCAGAGCGCCCTGTACCTCGCGCACACCTGCTGGTACTGGATCTGGCTTCCCTTTTCC[CG]CGCCACGCGCAGATCCTGCACCGCGCCGTCCAGTTTGCTGACTTCTGCAAAGGTAGCTGG 1
cg14830890_BC11 cg14830890_BC11 cg14830890 57744162 TACCTTTACAAAAATCAACAAACTAAACAACACAATACAAAATCTACACA 2669825 TACCTTTACAAAAATCAACAAACTAAACGACGCGATACAAAATCTACGCG T Red R cg R B C 1 I chr10 27413530 Human GRCh38 TACCTTTGCAGAAGTCAGCAAACTGGACGGCGCGGTGCAGGATCTGCGCG GCGCCCTGTACCTCGCGCACACCTGCTGGTACTGGATCTGGCTTCCCTTTTCCCGCGCCA[CG]CGCAGATCCTGCACCGCGCCGTCCAGTTTGCTGACTTCTGCAAAGGTAGCTGGGTCCAGC GCGCCCTGTACCTCGCGCACACCTGCTGGTACTGGATCTGGCTTCCCTTTTCCCGCGCCA[CG]CGCAGATCCTGCACCGCGCCGTCCAGTTTGCTGACTTCTGCAAAGGTAGCTGGGTCCAGC 1
cg14830903_TC11 cg14830903_TC11 cg14830903 45682976 AAAACATTACACCCCTATAAAAAACCCAACCAAAACAAAACAACACTTCA 7701424 AAAACATTACACCCCTATAAAAAACCCGACCAAAACGAAACGACGCTTCG T Red R cg R T C 1 I chr10 27413698 Human GRCh38 CGAAGCGCCGCTCCGCCTTGGCCGGGCTCCCCACAGGGGTGTAATGCTCC CGGTGCTCCTCCTGGAGGCGGAGAAGCGGTAGGAGTCGTTGGTGGTGAAATGGCCCTGCA[CG]AAGCGCCGCTCCGCCTTGGCCGGGCTCCCCACAGGGGTGTAATGCTCCTCTAGGTCTTCC GGAAGACCTAGAGGAGCATTACACCCCTGTGGGGAGCCCGGCCAAGGCGGAGCGGCGCTT[CG]TGCAGGGCCATTTCACCACCAACGACTCCTACCGCTTCTCCGCCTCCAGGAGGAGCACCG 1
cg14830905_BC11 cg14830905_BC11 cg14830905 10758143 AAAAAACAATAAAAATCATTAATAATAAAATAACCCTACACAAAACACCA 3745976 AAAAAACGATAAAAATCGTTAATAATAAAATAACCCTACACGAAACGCCG C Grn G cg F B C 1 I chr10 27413706 Human GRCh38 GAGAAGCGGTAGGAGTCGTTGGTGGTGAAATGGCCCTGCACGAAGCGCCG CTCCTGGAGGCGGAGAAGCGGTAGGAGTCGTTGGTGGTGAAATGGCCCTGCACGAAGCGC[CG]CTCCGCCTTGGCCGGGCTCCCCACAGGGGTGTAATGCTCCTCTAGGTCTTCCTCTTCGTC GACGAAGAGGAAGACCTAGAGGAGCATTACACCCCTGTGGGGAGCCCGGCCAAGGCGGAG[CG]GCGCTTCGTGCAGGGCCATTTCACCACCAACGACTCCTACCGCTTCTCCGCCTCCAGGAG 1
cg14830918_BC11 cg14830918_BC11 cg14830918 55741840 AAAATACAAAACAACAACCCCTCTAAACAATCAATATAACAACAATACCA 43755930 AAAATACGAAACAACAACCCCTCTAAACAATCGATATAACAACGATACCG A Red R cg F B C 1 I chr10 27413919 Human GRCh38 AAGGTGCGGGACAGCAGCCCCTCTAGGCAGTCGGTGTGACAGCGGTGCCG CCCAGCCACTGGAAGGTGCGGGACAGCAGCCCCTCTAGGCAGTCGGTGTGACAGCGGTGC[CG]GTGCCTGCAGATGGCCGTGGGTTCGGGGGTTTCCTCCTCCGGCAGGGGTGCATCGTCCAG CTGGACGATGCACCCCTGCCGGAGGAGGAAACCCCCGAACCCACGGCCATCTGCAGGCAC[CG]GCACCGCTGTCACACCGACTGCCTAGAGGGGCTGCTGTCCCGCACCTTCCAGTGGCTGGG 1
cg14830919_BC11 cg14830919_BC11 cg14830919 76640344 CCCCTCTAAACAATCAATATAACAACAATACCAATACCTACAAATAACCA 79809435 CCCCTCTAAACAATCGATATAACAACGATACCGATACCTACAAATAACCG T Red R cg F B C 1 I chr10 27413936 Human GRCh38 CCCCTCTAGGCAGTCGGTGTGACAGCGGTGCCGGTGCCTGCAGATGGCCG GCGGGACAGCAGCCCCTCTAGGCAGTCGGTGTGACAGCGGTGCCGGTGCCTGCAGATGGC[CG]TGGGTTCGGGGGTTTCCTCCTCCGGCAGGGGTGCATCGTCCAGCTCCAGCGGCAGGCGGG CCCGCCTGCCGCTGGAGCTGGACGATGCACCCCTGCCGGAGGAGGAAACCCCCGAACCCA[CG]GCCATCTGCAGGCACCGGCACCGCTGTCACACCGACTGCCTAGAGGGGCTGCTGTCCCGC 1
cg14830937_TC11 cg14830937_TC11 cg14830937 82695324 TAACTACTTACCTTCCAACTCCAATTCCTAAAATTCCTAATACCACTACA 90782245 TAACTACTTACCTTCCGACTCCGATTCCTAAAATTCCTAATACCACTACG A Red R cg F T C 1 I chr10 27414170 Human GRCh38 CGCAGTGGTACCAGGAATCTCAGGAATCGGAGTCGGAAGGCAAGCAGCCA GGGTCCCGGGGGTGGCTGCTTGCCTTCCGACTCCGATTCCTGAGATTCCTGGTACCACTG[CG]GCCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTCCGGCCCCGGCCTGGGCT GGGTCCCGGGGGTGGCTGCTTGCCTTCCGACTCCGATTCCTGAGATTCCTGGTACCACTG[CG]GCCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTCCGGCCCCGGCCTGGGCT 1
cg14830940_TC11 cg14830940_TC11 cg14830940 14805557 CTACAACCCAATAACAAAATCCAATTTAATAAACTTAAACTTCTACTCCA 47639147 CTACGACCCGATAACAAAATCCGATTTAATAAACTTAAACTTCTACTCCG A Red R cg F T C 1 I chr10 27414215 Human GRCh38 CGGAGCAGAAGCCCAAGCTCACCAAACCGGACTCTGCCACCGGGCCGCAG TTCCTGGTACCACTGCGGCCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTC[CG]GCCCCGGCCTGGGCTTGGGCTCCACCCACGGCATTGATTCTTCCTCTTAGGAAGCGCAGG TTCCTGGTACCACTGCGGCCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTC[CG]GCCCCGGCCTGGGCTTGGGCTCCACCCACGGCATTGATTCTTCCTCTTAGGAAGCGCAGG 1
cg14830941_BC11 cg14830941_BC11 cg14830941 68785949 CCCAATAACAAAATCCAATTTAATAAACTTAAACTTCTACTCCAACCCCA 16715559 CCCGATAACAAAATCCGATTTAATAAACTTAAACTTCTACTCCGACCCCG A Red R cg F B C 1 I chr10 27414221 Human GRCh38 CCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTCCGGCCCCG GTACCACTGCGGCCCGGTGGCAGAGTCCGGTTTGGTGAGCTTGGGCTTCTGCTCCGGCCC[CG]GCCTGGGCTTGGGCTCCACCCACGGCATTGATTCTTCCTCTTAGGAAGCGCAGGAGGAAC GTTCCTCCTGCGCTTCCTAAGAGGAAGAATCAATGCCGTGGGTGGAGCCCAAGCCCAGGC[CG]GGGCCGGAGCAGAAGCCCAAGCTCACCAAACCGGACTCTGCCACCGGGCCGCAGTGGTAC 1
cg14838929_BC11 cg14838929_BC11 cg14838929 18779523 TAAAACTACACACCAAAAATTTAAAATAAACATAATAATACAAAAAAACA 86765929 TAAAACTACACACCAAAAATTTAAAATAAACGTAATAATACAAAAAAACG T Red R cg F B C 1 I chr10 28326170 Human GRCh38 TGGAGCTGCACACCAAAGATTTGGGGTAGACGTGATAATGCAGAGAAACG GTTACCCTATTCTGGAGCTGCACACCAAAGATTTGGGGTAGACGTGATAATGCAGAGAAA[CG]TTTTTCAGGTGTGAAAATCTCTTATTTTTATTTATATAATCCCATATCAATTATTGGGGT ACCCCAATAATTGATATGGGATTATATAAATAAAAATAAGAGATTTTCACACCTGAAAAA[CG]TTTCTCTGCATTATCACGTCTACCCCAAATCTTTGGTGTGCAGCTCCAGAATAGGGTAAC 1
cg14873490_BC11 cg14873490_BC11 cg14873490 75748921 CTTCACACAAACAACAAACTAATAAAAACTACAACTAACACTTCATTACA 95692425 CTTCACGCGAACGACAAACTAATAAAAACTACAACTAACGCTTCATTACG C Grn G cg F B C 1 I chr7 94656992 Human GRCh38 CTTCACGCGGGCGACAAACTGATGGGAGCTACAACTGGCGCTTCATTGCG GCTACAAGCACGCTTCACGCGGGCGACAAACTGATGGGAGCTACAACTGGCGCTTCATTG[CG]CTATAAACTGATGGGCGCTTTATGTGCCACAAACTGACGGATGGGCGCTTCAGTGGCGCT AGCGCCACTGAAGCGCCCATCCGTCAGTTTGTGGCACATAAAGCGCCCATCAGTTTATAG[CG]CAATGAAGCGCCAGTTGTAGCTCCCATCAGTTTGTCGCCCGCGTGAAGCGTGCTTGTAGC 1
cg14940610_BC11 cg14940610_BC11 cg14940610 8737503 TTTTAAAACAAAATCTTATTCTATCACACAACCTAAAATACAATAACACA 49698881 TTTTAAAACAAAATCTTATTCTATCGCACAACCTAAAATACAATAACGCG A Red R cg F B C 1 I chr10 38728089 Human GRCh38 TTTTGAGACAGAGTCTTGTTCTGTCGCACAGCCTGGAGTGCAGTGGCGCG ACTGGTTTATTTTTTTGAGACAGAGTCTTGTTCTGTCGCACAGCCTGGAGTGCAGTGGCG[CG]ATCTTGGCTCACTGCAACTTCTGCCTCACAGGTTGAAGCGATTCTTCTGCCTCAGCCTCC GGAGGCTGAGGCAGAAGAATCGCTTCAACCTGTGAGGCAGAAGTTGCAGTGAGCCAAGAT[CG]CGCCACTGCACTCCAGGCTGTGCGACAGAACAAGACTCTGTCTCAAAAAAATAAACCAGT 1

Total number of rows: 22819

Table truncated, full table size 6582 Kbytes.




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Supplementary data files not provided
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