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| Status |
Public on Aug 01, 2006 |
| Title |
CSIRO cotton whole plant cDNA array |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Gossypium hirsutum |
| Manufacturer |
CSIRO |
| Manufacture protocol |
cDNAs spotted in DMSO using a Cartesian robot?
|
| Support |
glass |
| |
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| Description |
48 blocks consisting of 22 columns and 23 rows each. Blocks are numbered left to right and top to bottom on the array.
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| Contributor(s) |
Llewellyn D |
| Submission date |
Jul 31, 2006 |
| Last update date |
Aug 01, 2006 |
| Contact name |
David Horvath |
| E-mail(s) |
[email protected]
|
| Phone |
701-239-1255
|
| Organization name |
US Dept. Agriculture
|
| Department |
Agr. Research Service
|
| Lab |
Bioscience Research Lab
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| Street address |
1605 Albrecht Blvd
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| City |
Fargo |
| State/province |
ND |
| ZIP/Postal code |
58105 |
| Country |
USA |
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| Samples (26)
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GSM148148, GSM148150, GSM148199, GSM148200, GSM148201, GSM148202
GSM148203, GSM148204, GSM261939, GSM261940, GSM261941, GSM261942, GSM261943, GSM261944, GSM261945, GSM261946, GSM261947, GSM261948, GSM261949, GSM261950, GSM261951, GSM261952, GSM261953, GSM261954, GSM261955, GSM261956
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| Series (2) |
| GSE6445 |
velvetleaf/corn competition study |
| GSE10363 |
Within and between-species transcript profiling during cotton fibre development |
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| Data table header descriptions |
| ID |
|
| Block |
48 blocks consisting of 22 columns and 23 rows each. Blocks are numbered left to right and top to bottom on the array. |
| Column |
Columns designated within each block. |
| Row |
Rows designated within each block. |
| SPOT_ID |
Clone designation used by CSIRO. |
| GB_LIST |
Genbank accession number for each clone submitted. |
| Blast hit |
Top blast hit for each sequenced clone. |
| Data table |
| ID |
Block |
Column |
Row |
SPOT_ID |
GB_LIST |
Blast hit |
| 1 |
1 |
1 |
1 |
GA__Ea0007A22 |
BE055662 |
40S ribosomal protein S23. |
| 2 |
1 |
2 |
1 |
GA__Ea0007A02 |
BG440278 |
Hypothetical protein. |
| 3 |
1 |
3 |
1 |
GA__Ea0006C17 |
AW666844 |
No Hit |
| 4 |
1 |
4 |
1 |
GA__Ea0006C04 |
BG440155 |
NBS-LRR disease resistance protein homologue. |
| 5 |
1 |
5 |
1 |
GA__Ea0005G10 |
BE055151 |
No Hit |
| 6 |
1 |
6 |
1 |
GA__Ea0005F04 |
BG439935 |
Catechol O-methyltransferase (EC 2.1.1.6). |
| 7 |
1 |
7 |
1 |
CHX005E05 |
DT461860 |
not blasted |
| 8 |
1 |
8 |
1 |
CHX005D04 |
DT461850 |
not blasted |
| 9 |
1 |
9 |
1 |
CHX004C10 |
|
|
| 10 |
1 |
10 |
1 |
CHX004B07 |
DT461755 |
not blasted |
| 11 |
1 |
11 |
1 |
CHX003B08 |
DT461674 |
not blasted |
| 12 |
1 |
12 |
1 |
CHX003A05 |
DT461661 |
Eukaryotic translation initiation factor 5 (eIF-5). |
| 13 |
1 |
13 |
1 |
CHX002A01 |
DT461571 |
not blasted |
| 14 |
1 |
14 |
1 |
CHX001G11 |
DT461560 |
not blasted |
| 15 |
1 |
15 |
1 |
GA__Ea0004I19 |
BE054711 |
Putative ribosomal protein S14. |
| 16 |
1 |
16 |
1 |
GA__Ea0004H15 |
BE054419 |
No Hit |
| 17 |
1 |
17 |
1 |
GA__Ea0003I12 |
BE053662 |
No Hit |
| 18 |
1 |
18 |
1 |
GA__Ea0003E21 |
BE052526 |
Putative rubisco subunit binding-protein beta subunit. |
| 19 |
1 |
19 |
1 |
GA__Ea0002H14 |
BE052279 |
Hypothetical protein F10M23.150 (Hypothetical protein AT4g26810). |
| 20 |
1 |
20 |
1 |
GA__Ea0002G17 |
BE051936 |
Hypothetical protein At2g38430/T19C21.8. |
Total number of rows: 24288
Table truncated, full table size 1547 Kbytes.
| Supplementary data files not provided |
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