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Platform GPL4745 Query DataSets for GPL4745
Status Public on May 07, 2007
Title S. mutans UA159 v2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Streptococcus mutans
Manufacturer TIGR PFGRC
Manufacture protocol 2QSM, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 6075497, pen id 10185, pen cycles -1, operator cs, humidity control On, humidity set point65
Coating other
 
Description Grids: 96 Array Type : ss_oligo (70-mer) Surface Coating: Epoxy
Printing Buffer(s): Schott Nexterion
Arraying Machine(s): Lucidea
Controls: 500 A. thaliana (70-mers)
 
Submission date Jan 11, 2007
Last update date May 07, 2007
Contact name Moshe Shemesh
E-mail(s) [email protected]
Phone 97226757577
Fax 97226758561
Organization name Hebrew University-Hadassah
Department Institute of Dental Sciences
Lab biofilms
Street address Hebrew University-Hadassah POB 12272
City Jerusalem
ZIP/Postal code 91120
Country Israel
 
Samples (27) GSM155271, GSM155272, GSM155273, GSM314034, GSM314035, GSM314036 
Series (3)
GSE6744 Gene expression profiling of Streptococcus mutans in biofilm and planktonic conditions
GSE12496 Transcription analysis of biofilm grown in different depth
GSE23159 Streptococcus mutans UA159 control vs. Streptococcus mutans UA159 supplemented with 20 uM 4,5-dihydroxy-2,3-pentadione (DPD) at 3 different pH values

Data table header descriptions
ID
Row Row of slide
Column Colunm of slide
Meta Row Meta row of slide
Meta Column Meta colunm of slide
Sub Row Row of block
Sub Column Colunm of block
Oligo ID Oligo identification
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain UA159 Target map of strain UA159
ORF Locus primarily hit by the oligo
SPOT_ID spot identifier
NAME

Data table
ID Row Column Meta Row Meta Column Sub Row Sub Column Oligo ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain UA159 ORF SPOT_ID NAME
1 1 1 1 1 1 1 2SM00001_C_1 GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC 24.29 33 128 UA159 SMU.1047c hypothetical protein SMU.1047c::70::100.0::1.0E-11::+ SMU.1047c NTORF0953
2 1 2 1 1 1 2 2SM00001_G_1 GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA 28.57 31 87 UA159 SMU.1456c hypothetical protein SMU.1456c::70::100.0::8.4E-12::+ SMU.1456c NTORF1322
3 1 3 1 1 1 3 2SM00001_K_1 TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT 31.43 31 99 UA159 SMU.2090c conserved hypothetical protein SMU.2090c::70::100.0::7.1E-12::+ SMU.2090c NTORF1892
4 1 4 1 1 1 4 2SM00001_O_1 GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG 35.71 31 106 UA159 SMU.457 hypothetical protein SMU.457::70::100.0::6.5E-12::+ SMU.457 NTORF0413
5 1 5 1 1 1 5 2SM00001_D_1 CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT 34.29 31 123 UA159 SMU.959c hypothetical protein "SMU.960::70::100.0::2.9E-12::-,SMU.959c::70::100.0::4.3E-12::+" SMU.959c NTORF0870
6 1 6 1 1 1 6 2SM00001_H_1 GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT 34.29 32 90 UA159 SMU.895 possible DNA-damage-inducible protein SMU.895::70::100.0::4.0E-12::+ SMU.895 NTORF0815
7 1 7 1 1 1 7 2SM00001_L_1 ATCAAGCTGTAGGCAAACAATATACCTACGGTAAAGGTATGGAGGAACTATCTGAAGTAGAACAACTACA 38.57 31 94 UA159 SMU.1356c putative transposase fragment SMU.1356c::70::100.0::3.7E-12::+ SMU.1356c NTORF1235
8 1 8 1 2 1 1 2SM00001_C_1 GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC 24.29 33 128 UA159 SMU.1047c hypothetical protein SMU.1047c::70::100.0::1.0E-11::+ SMU.1047c NTORF0193
9 1 9 1 2 1 2 2SM00001_G_1 GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA 28.57 31 87 UA159 SMU.1456c hypothetical protein SMU.1456c::70::100.0::8.4E-12::+ SMU.1456c NTORF0479
10 1 10 1 2 1 3 2SM00001_K_1 TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT 31.43 31 99 UA159 SMU.2090c conserved hypothetical protein SMU.2090c::70::100.0::7.1E-12::+ SMU.2090c NTORF1726
11 1 11 1 2 1 4 2SM00001_O_1 GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG 35.71 31 106 UA159 SMU.457 hypothetical protein SMU.457::70::100.0::6.5E-12::+ SMU.457 NTORF1232
12 1 12 1 2 1 5 2SM00001_D_1 CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT 34.29 31 123 UA159 SMU.959c hypothetical protein "SMU.960::70::100.0::2.9E-12::-,SMU.959c::70::100.0::4.3E-12::+" SMU.959c NTORF1626
13 1 13 1 2 1 6 2SM00001_H_1 GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT 34.29 32 90 UA159 SMU.895 possible DNA-damage-inducible protein SMU.895::70::100.0::4.0E-12::+ SMU.895 NTORF1609
14 1 14 1 2 1 7 2SM00001_L_1 ATCAAGCTGTAGGCAAACAATATACCTACGGTAAAGGTATGGAGGAACTATCTGAAGTAGAACAACTACA 38.57 31 94 UA159 SMU.1356c putative transposase fragment SMU.1356c::70::100.0::3.7E-12::+ SMU.1356c NTORF0557
15 1 15 1 3 1 1 2SM00001_C_1 GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC 24.29 33 128 UA159 SMU.1047c hypothetical protein SMU.1047c::70::100.0::1.0E-11::+ SMU.1047c NTORF0372
16 1 16 1 3 1 2 2SM00001_G_1 GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA 28.57 31 87 UA159 SMU.1456c hypothetical protein SMU.1456c::70::100.0::8.4E-12::+ SMU.1456c NTORF1447
17 1 17 1 3 1 3 2SM00001_K_1 TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT 31.43 31 99 UA159 SMU.2090c conserved hypothetical protein SMU.2090c::70::100.0::7.1E-12::+ SMU.2090c NTORF0686
18 1 18 1 3 1 4 2SM00001_O_1 GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG 35.71 31 106 UA159 SMU.457 hypothetical protein SMU.457::70::100.0::6.5E-12::+ SMU.457 NTORF1041
19 1 19 1 3 1 5 2SM00001_D_1 CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT 34.29 31 123 UA159 SMU.959c hypothetical protein "SMU.960::70::100.0::2.9E-12::-,SMU.959c::70::100.0::4.3E-12::+" SMU.959c NTORF1774
20 1 20 1 3 1 6 2SM00001_H_1 GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT 34.29 32 90 UA159 SMU.895 possible DNA-damage-inducible protein SMU.895::70::100.0::4.0E-12::+ SMU.895 NTORF1806

Total number of rows: 10752

Table truncated, full table size 2064 Kbytes.




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