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Platform GPL5679 Query DataSets for GPL5679
Status Public on Nov 15, 2007
Title Spectral Chip 2600 BAC array
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Spectral Genomics (now part of Perkin Elmer)
Manufacture protocol Commercial chip; 48 subarrays (12X4), each containing 120 spotted BAC clones (10X12); duplicate clones within each subarray; 2600 BAC clones total (~1Mb resolution)
Support glass
Coating unknown
 
 
Submission date Jul 27, 2007
Last update date Nov 15, 2007
Contact name James Korkola
E-mail(s) [email protected]
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Samples (74) GSM213543, GSM213544, GSM213545, GSM213546, GSM213547, GSM213548 
Series (1)
GSE8614 Genomic Profiling of Adult Male Germ Cell Tumors

Data table header descriptions
ID
CLONE_ID BAC, PAC, or cosmid clone identifier (supplied by spectral genomics)
GB_ACC GenBank Accession number
Chr chromosomal location of clone
Position position within chromosome (in Mb)

Data table
ID CLONE_ID GB_ACC Chr Position
RP1-62I8 RP1-62I8 1 1
RP11-421C4 RP11-421C4 1 1.3
RP1-283E3 RP1-283E3 1 1.5
RP1-163G9 RP1-163G9 1 2.6
CTC-232B23 CTC-232B23 1 3.9
RP11-447M5 RP11-447M5 1 3.9
RP4-703E10 RP4-703E10 1 4.8
RP3-491M17 RP3-491M17 1 5.2
RP11-33M12 RP11-33M12 1 5.5
RP3-438L4 RP3-438L4 1 6.8
RP4-633I8 RP4-633I8 1 8.4
RP11-476D13 RP11-476D13 1 9
AL031984.13 AL031984.13 1 10.4
RP3-330O12 RP3-330O12 1 11.3
RP5-888M10 RP5-888M10 1 12.1
RP11-219C24 RP11-219C24 1 12.7
RP4-726F20 RP4-726F20 1 13.5
RP5-864I18 RP5-864I18 1 14.4
RP11-169K16 RP11-169K16 1 15.4
RP1-163M9 RP1-163M9 1 16.1

Total number of rows: 2593

Table truncated, full table size 76 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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