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Platform GPL6780 Query DataSets for GPL6780
Status Public on Apr 29, 2008
Title VMSR Compugen Human Oligo P6G5
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Microarrays, Inc
Manufacture protocol Microarrays containing all oligonucleotides from the Compugen Human Release 2.0 OligoLibrary were resuspended in 150mMol phosphate buffer and arrayed according to the manufacturers recommendations. Microarrays were produced by Microarrays Incorporated (www.microarrays.com) utilizing custom, high precision robotics and amine-coated glass slides from Genexprex. The microarrays were then crosslinked using 80mjoules of ultraviolet energy (Stratagene Stratalinker, LaJolla, CA). Following crosslinking, the arrays were baked for two hours at 70C in a standard oven and stored under low humidity conditions until use.
 
 
Submission date Apr 24, 2008
Last update date Jan 18, 2013
Contact name Braden Boone
Organization name Vanderbilt University
Department Vanderbilt Microarray Shared Resource
Street address 465 21st Ave South
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Samples (5) GSM285051, GSM285052, GSM285053, GSM630003, GSM630004
Series (2)
GSE11293 Investigation of gene expression signature induced by Alk5TD (active type I TGF-beta receptor)
GSE25641 Expression data from SPAK transfected Caco2-BBE cells

Data table header descriptions
ID
GENE_NAME gene name
GB_ACC GenBank Accession number
SEQUENCE sequence of oligo
SPOT_ID identifies spots without GenBank Accession

Data table
ID GENE_NAME GB_ACC SEQUENCE SPOT_ID
vmcm37 Dye Corner Marker --Dye Corner Marker
vh011593 Laminin, gamma 2 NM_005562 GCATGAAATTCTTCCTAATGTCAGAACAGAGTGCAACCCAGTCACACTGTGGCCAGTAAA
vh011605 Spondin 1, extracellular matrix protein NM_006108 TGGTCCTCCCAGACATGCATAGGAATGGCCACAGGTTTACACTGCCTTCCCAGCAATTAT
vh011689 Amine oxidase, copper containing 3 (vascular adhesion protein 1) NM_003734 AGAGTGGCCAATCCCTGTGTGTCGTTCCCTTGTGTCTGTTGCTTATTGGGAGTAGGAGTT
vh011701 CD44 antigen (homing function and Indian blood group system) NM_000610 AATTAGGGCCCAATTAATAATCAGCAAGAATTTGATCGTTCCAGTTCCCACTTGGAGGCC
vh011785 Collagen, type VI, alpha 3 NM_004369 GCTGTGCAAGATTCTGGTATGGAGGTTGTGGTGGAAACGAAAACAAATTTGGATCACAGA
vh011797 Chromosome 21 open reading frame 29 NM_144991 CAGGAGGGTTGGGCCCTGCTTTCCACCAAGTCACTCAGAAGGTCCCAATCACACATGATT
vh011881 Contactin 3 (plasmacytoma associated) AB040929 AATGAAATCCCACCATCTATCTGAGTGAGTCTGGCAGGCTTTTTAGTTCCTGAGTTAAAT
vh011893 Elastin microfibril interfacer 1 NM_007046 GTCTGAACCAGGCACGGTCCCCTTCGACAGAGTCCTGCTCAATGATGGAGGCTATTATGA
vh011977 Endothelin 3 NM_000114 CCGTGGCAAGATGGTATCAGAGAGAAACCCATCAATTGCTCAAATACTCAGAAAGTACTG
vh011989 Stanniocalcin 1 NM_003155 ATACATTAGGAAGTGGCAGTTCTTTACTCGTCCCCTTTCATCGGTGCCTGGTACTCTGGC
vh012073 Ksp37 protein NM_031950 CAGCAATATGATAGGGAACAGGTGCTGATGGGCCCAAGAGTGACAAGCATACACAACTAC
vh012085 Tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa) NM_003326 TCTGGACAAGCTTACATCTTCCTCAGCCATCTTTGTGAGTCCTTCAAGAGCAGTTATCAA
vh012169 Endothelin 1 NM_001955 GCAGGAGCATCCTCTGCTGGTTCCTGACTGGCAAAGGACCAGCGTCCTCGTTCAAAACAT
vh012181 Chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) NM_006419 TCTGAACTCTACCTCCAGACAGAATGAAGTTCATCTCGACATCTCTGCTTCTCATGCTGC
vh012265 Stanniocalcin 2 NM_003714 CTTGTGAGATTCGGGGCTTACATGGGATTTGCATGACTTTTCTGCACAACGCTGGAAAAT
vh012277 Interferon, alpha 7 NM_021057 TACCCACCTCAGGTAGCCTAGTGATATTTGCAAAATCCCAATGGCCCGGTCCTTTTCTTT
vh012361 Pleckstrin and Sec7 domain containing 4 NM_012455 AAGGTGAAGCGCAACATCTCAGAGCGCAGAACCTACCGGAAGATCATCCCTAAGCGGAAC
vh012373 Neuronal PAS domain protein 3 NM_022123 CTCTGCCATAGAATACTCAGTCTTGTGGTCAAGAGAGTTCTCAAGTGACAACCATTGGGG
vh012457 Transducin (beta)-like 1X-linked NM_005647 CAGACCTTCCTAGAGTGTTTGGTCGGGTTCACAGTGACCGAGAGTCAGGTCCAGCACACA

Total number of rows: 29616

Table truncated, full table size 3459 Kbytes.




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