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GEO help: Mouse over screen elements for information. |
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Status |
Public on May 16, 2008 |
Title |
Salmonella enterica 17K STv7bSws_MMCC |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Salmonella enterica |
Manufacturer |
Sidney Kimmel Cancer Center |
Manufacture protocol |
Custom made Salmonella array
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Support |
glass |
Coating |
aminosilane |
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Description |
whole slide version of GPL4805
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Contributor(s) |
Porwollik S, McClelland M, Santiviago C, Cheng P, Xia X |
Submission date |
May 15, 2008 |
Last update date |
May 16, 2008 |
Contact name |
Michael McClelland |
E-mail(s) |
[email protected]
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Phone |
858-336-9554
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Organization name |
University of California, Irvine
|
Department |
Microbiology & Molecular Genetics
|
Street address |
132 Med Surge I
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City |
Irvine |
State/province |
CA |
ZIP/Postal code |
92697 |
Country |
USA |
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Samples (71)
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GSM289174, GSM289175, GSM289176, GSM289177, GSM289178, GSM289179
GSM289180, GSM289181, GSM289182, GSM289183, GSM289184, GSM289185, GSM289186, GSM289187, GSM289188, GSM289189, GSM289190, GSM289191, GSM289192, GSM289193, GSM289194, GSM289195, GSM289196, GSM289197, GSM289198, GSM289199, GSM289200, GSM289201, GSM289202, GSM289203, GSM289204, GSM289205, GSM289206, GSM289207, GSM289208, GSM289209, GSM341670, GSM341671, GSM341672, GSM341673, GSM341674, GSM341675, GSM467935, GSM467936, GSM467937, GSM467938, GSM467939, GSM467940, GSM467941, GSM467942, GSM467943, GSM467944, GSM467945, GSM467946, GSM467947, GSM467948, GSM467949, GSM467950, GSM467951, GSM467952, GSM468284, GSM468285, GSM468286, GSM737210, GSM737211, GSM807658, GSM807659, GSM807660, GSM807661, GSM807662, GSM807663
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Series (5)
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GSE8573 |
Salmonella Typhimurium transcription profiles in space flight |
GSE11486 |
Transcriptional profiles of Salmonella typhimurium wt, hfq and smpB mutants in four different growth conditions |
GSE19609 |
High-throughput screening for Salmonella avirulent mutants that retain targeting of solid tumors |
GSE29735 |
Similar effects of an NO challenge and an lpdA knockout on transcription of Salmonella enterica sv Typhimurium 14028 |
GSE32585 |
The nsrR regulon in Salmonella Typhimurium 14028s |
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Data table header descriptions |
ID |
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ARRAY_ROW |
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ARRAY_COLUMN |
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ROW |
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COLUMN |
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NEW_CHIP_ID |
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SEQUENCE |
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PRIMARY_LT2_GENE |
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LT2_GENE_IN_>_1_SPOT |
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SPOT_REPRESENTS_>_1_LT2_GENE |
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LT2_GENE_NAME |
|
PRIMARY_CT18_GENE |
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CT18_GENE_IN_>_1_SPOT |
|
SPOT_REPRESENTS_>_1_CT18_GENE |
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CT18_GENE_NAME |
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PRIMARY_SARB42_GENE |
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ORF |
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SPOT_ID |
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SARB42_GENE_IN_>_1_SPOT |
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SPOT_REPRESENTS_>_1_SARB42_GENE |
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SARB42_GENE_NAME |
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PRIMARY_PT4_GENE |
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PT4_GENE_IN_>_1_SPOT |
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SPOT_REPRESENTS_>_1_PT4_GENE |
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CTRL_CHAR |
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STM_HOMOLOGY_IN_GENOME |
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STY_HOMOLOGY_IN_GENOME |
|
SPA_HOMOLOGY_IN_GENOME |
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SPT_HOMOLOGY_IN_GENOME |
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Data table |
ID |
ARRAY_ROW |
ARRAY_COLUMN |
ROW |
COLUMN |
NEW_CHIP_ID |
SEQUENCE |
PRIMARY_LT2_GENE |
LT2_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_LT2_GENE |
LT2_GENE_NAME |
PRIMARY_CT18_GENE |
CT18_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_CT18_GENE |
CT18_GENE_NAME |
PRIMARY_SARB42_GENE |
ORF |
SPOT_ID |
SARB42_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_SARB42_GENE |
SARB42_GENE_NAME |
PRIMARY_PT4_GENE |
PT4_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_PT4_GENE |
CTRL_CHAR |
STM_HOMOLOGY_IN_GENOME |
STY_HOMOLOGY_IN_GENOME |
SPA_HOMOLOGY_IN_GENOME |
SPT_HOMOLOGY_IN_GENOME |
1 |
1 |
1 |
1 |
1 |
CTRL6_001 |
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|
|
|
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--CTRL_LT2_gDNA_Cy3 |
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CTRL_LT2_gDNA_Cy3 |
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|
|
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2 |
1 |
1 |
1 |
2 |
CHIP6_4403 |
AATACGGCAACCTGGAAATAATGGAAAAGACATATAACCCCCAAGATATCGAACAGCCGCTTTACGAGCACTGGGAAAAGCAGGGCTATTTCAAGCCTAACGGCGACGAAAGCAAAGAGTCCTTCTGCATCATGATCCCGCCGCCGAACGTCACCGGCAGTTTGCATATGGGACATGCTTTCCAGCAAACCATCATGGATACCATGATCCGTTACCAGCGTATGCAGGGTAAAAACACCCTGTGGCAGGTCGGCACCGACCACGCCGGGATCGCCACCCAGATGGTGGTTGAGCGCAAGATTGCCGCTGAAGAAGGTAAAACCCGTCACGACTACGGCCGCGATGCGTTTATCGACAAAATCTGGCAGTGGAAAGCGGAATCCGGCGGCACCATTACCCGCCAAATGCGCCGTCTCGGCAACTCCGTTGACTGGGAGCGCGAGCGCTTCACCATGGACGAAGGCCTTTCCAATGCCGTGAAAGAAGTCTTTGTTCGCCTGTACAAAGAAGACCTGATTTACCGTGGCAAACGCCTGGTGAACTGGGACCCGAAACTGCGCACCGCCATCTCTGACCTGGAAGTGGAAAACCGCGAGTCCAAAGGCTCGATGTGGCACATCCGCTATCCGCTGGCCGACGGCGCGAAAACCGCAGACGGTAAAGATTATCTGGTTGTCGCCACCACCCGCCCGGAAACTATTCTCGGCGATACCGGCGTGGCCGTGAACCCGGAAGATCCGCGCTACCAGAGTCTTATCGGTAAATTCGTTATTCTGCCGCTGGTTAACCGCCGCATTCCGATTGTTGGCGACGAACACGCCGATATGGAAAAAGGCACCGGCTGCGTGAAGATCACCCCGGCGCACGACTTTAACGACTATGAGGTCGGGAAACGTCATGCCCTGCCGATGATCAACATCCTGACCTTTGACGGCGACATCCGCGAAAGCGCGGAAGTGTTCGATACCAAAGGTGAAGAGTCTGACGTTTATTCCAGCGAGATTCCGGCTGAGTTCCAGAAGCTGGAACGCTTTGCTGCCCGTAAAGCAGTCGTTGCTGCCGTTGACGCGCTGGGCCTGCTGGAAGAAATTAAACCGCACGATCTGACTGTCCCTTACGGCGACCGTGGCGGCGTGGTTATCGAACCGATGCTGACCGACCAGTGGTACGTCCGTGCTGACGTGCTGGCGAAAC |
STM4475 |
|
|
valS |
STY4814 |
|
|
valS |
SPA4276 |
SPA4276 |
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|
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valS |
SEN4228 |
|
|
|
100 |
100 |
100 |
100 |
3 |
1 |
1 |
1 |
3 |
CHIP6_1618 |
GTAAATATATGCTTACCGAAAAATATGATTTTCGCATTACCGATCAGATGACTATCCCACTCAGACCTCATTGGATAGCCAATGATTCATACAGGGAAAAGTGTAAAATGCTTGTCCTCAACCGGAGTAAAGGGGAAATTCATAAGGTAGACTTTAGTAAATTAACAGATTATATCAAAGAAGGTGATGTAATCTGTTTTAACGACAGTACTATAATAAACCATATGTTTATCTGTAAAACAAGACAGAATAGGTTAATTAAAATTGTTTTAGAGGGATTTTTACCAAATAATAGAGTAATTATTTCCGGACTTTTAAAAGAAAGGCTTAACGCGAATGATGTTTTCTATTTGGTTGATAACCCTGAAATTTCCATTAAGATAGAGCAAAGGTTTAGCGAGGAGAGCCAGTACCGGGCCGTCGTGGAAAATCATGAGGCCTTAATTTGCTATTTAGCCAGTCATGGTGAGCGTCTTGATGAGTATGTGGACTCCAGCTTGTTTTATAAATATCCAGATGCTTACCGTTCCGTTTTTTCTAAAAAATATGGTTCTTTGGAAATACCTTCTGCCGGCATTCATTTTACCTGGGATCTTATCCAAAGAATCAAAGATAAAGGTGGGTTAATATCCTTCATCACTTTACATGTTGCATCAACAGAAATGTTGTCCAACAGAAAAATACAAACAAAATGTGTAGAGGAAGTGACTATCAACGAAGAATACTACGAGGTTCCACAAGCTACAGCGGATATCATTAATACTGCGAAGCAAAATGGCGGACGTATTTTTGCCGTAGGAACTACCGTTACACGATGTCTGGAATCTGCGTATTCGAGGGAACACAATTGCCTCAAAGCAAGTTCTGGCTGGACTGCGCTTTATATACATCCAGGCTATCAACTGAAAGTGGTTGACTGCCTGCTAACGAACTTACATCAGCCAAAAACGACGCATATGGTGTTAACTGGTCAGTTTGCTGGGGTTGATCTACTCATTAAGGCCTATACCTCAGAACATATCCAGTCATGTCAGTTCGATATGTTTGGTGATTGCATGTTAATCATACAAGATGAAGGGCAGGGATGA |
STM1548.s |
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- |
STY1513 |
|
|
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SPA1315 |
SPA1315 |
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1 |
- |
SEN1504 |
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|
|
100 |
100 |
100 |
100 |
4 |
1 |
1 |
1 |
4 |
CHIP6_1805 |
TTCTTTTAGGTGAGGTTACCGTGTCACTTTCTTTGTCGTCGGTTCGCCGTCGTCTTTATCATAATCTGTTCGATTTGACTACGCGCTCAGGTCGCCGTTTTGAAGGGTTATGCGCGCTGTTTGCGCTGCTTAGCGTACTGGTCATTTTTGTTGAATCAGGCGTAGGAACGGAATATCACCTGACATTTGATGAATGGCATATTTTTGTCTGGCTGGAGCTCTGCGTTACCCTGATATTTACCGGTGAATACTTGCTCAGACTGTTTAGCTGGCCCGAACCGGCAAAATACGTTTTTAGTTTCTGGGGATTTATTGATCTGGTGACGATTTTGCCGCTGTACGTCATGTGGCTGTGGCCGGAAATTAGCCTGAACTATATGTTTGCCTGGCGCGCTATGCGAGCGATTCGCGTGCTGCGTATTCTTAAACTGCTACGCTTTATGCCATCGCTGCGGGTATTCTGGAGCGCCATTATTAGCGCGCGTCATCAGCTTATTCTGTTCTATTCATTTATTGCGATCGTGATGATTATTTTCGGTGCCCTGATGTATCTTATTGAAGGACCGAAATATGGCTTCACGACGCTTAATGCCTCGGTGTATTGGGCGATAGTGACAGTCACAACCGTGGGGTACGGTGATATTACGCCGCATACGCCGCTGGGACGTATTGTCGCGTCGGTGCTTATTTTGATTGGCTATTCGGTGATTGCGATTCCTACAGGACTGATTACCACGCACATGAGCAGCGCGTTTCAAAAACGTCACTGGCAGCGAAAATGTCCGCAGTGCCAGCAAAGCCAGCATGAACATAGCGCGCAATATTGTAACCGATGCGGCAGTAAGCTACCGGATTAA |
STM1741 |
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|
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STY1310 |
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SPA1136 |
SPA1136 |
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- |
SEN1294 |
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100 |
100 |
100 |
100 |
5 |
1 |
1 |
1 |
5 |
CHIP6_3964 |
TATTAACTTCAGTAATATCCACCTCTGTTTTTGCTGGCGCTTATGTAGAAAACCGTGAGGCCTATAACCTGGCGTCTGACCAAATGGAGTTTATGCTGCGCGTCGGCTATAACTCCGATATGGGGGCCGGAATTATGTTGACCAATACCTATACGCTACAGCGTGATGATGAATTAAAGCACGGTTATAATGAGATTGAGGGCTGGTATCCATTATTTAAACCTACAGATAAATTAACCATCCAGCCTGGGGGGTTAATAAACGACAAAAGCATTGGTTCCGGCGGCGCCGTCTATCTGGATGTTAACTATAAATTTACCCCGTGGTTTAATCTTACGGTACGTAACCGATATAATCACAATAATTATAGTTCAACCGATTTGAATGGCGAACTGGATAATAATGACAGCTATGAAATCGGTAACTATTGGAATTTTATCATTACCGATAAATTTTCTTATACCTTTGAACCACACTATTTTTATAACGTTAATGATTTTAATAGTAGTAATGGTACGAAGCATCATTGGGAAATCACTAATACCTTCCGTTATCGTATCAATGAACACTGGTTGCCCTACTTTGAATTACGCTGGTTAGATCGTAACGTGGGCCCCTACCATAGAGAGCAAAACCAGATTCGTATCGGGGCGAAGTATTTCTTCTGA |
STM4016 |
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yshA |
STY3862 |
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SPA3857 |
SPA3857 |
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|
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yshA |
SEN3803 |
|
|
|
100 |
100 |
100 |
100 |
6 |
1 |
1 |
1 |
6 |
CHIP6_2474 |
GGGTAAACGCCTGATTGAAGATGAAGAGTACTGAGTTTCATCCAGCCGATTATGATGTACACGGACGTTTACGCCTGCCGTTTCTGTTCTGGTGCGTACTGCTACTTCAGGCGCGCGCCTGGGTACTCTTTGTCATTGCCGGTTCATCCCGTGGACAGGGTAATACTTTGTTAAACTTTTTTTATCCCGACCATGACAATTTTTGGCTGGGGCTGTTGCCCGGCGTTCCGGCGGTAGTGGCATTTTTACTCAGCGGGCGGCGTGACGCGGTTCCTGGTGTGTGGCGCTGGCTGCGCGGACTCCTGATCCTTGCTCAACTGGTGTCGTTGTGCTGGCTGCCGGTGATGTGGCTGGGTGGCGACCCGGTCAACGGCGTCGGGCTGGCGCTGCTGCTGGCGGACATCGTCGCGCTGATCTGGCTGTTAACCAATCAACGTTTGCGTGCCTGTTTTTCCCTTGAGAAAGAAT |
STM2448 |
|
|
yfeZ |
STY2685 |
|
|
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SPA0418 |
SPA0418 |
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|
|
yfeZ |
SEN2429 |
|
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|
100 |
100 |
100 |
100 |
7 |
1 |
1 |
1 |
7 |
CHIP6_3586 |
AAGAAGTGAGGAAATAACACATGACTAAAGCAGGCAAAATAACCGCCGCCATCACAGGGACTTTCTTGTTGTTGATCGCCATAGTGATTTTGTTGATCGCAACATTTGACTGGAACCGCCTCAAACCGACCATCAACCAGAAAGTCTCTACCGAATTGAACCGGCCTTTCGCTATTCGCGGCGATTTAGGCGTGGTGTGGGAACGCCAAAAACAGGAGACCGGCTGGCGAAGCTGGGTACCGTGGCCGCATGTTCACGCGGAAGACGTCATTCTCGGCAATCCGCCAGATATTCCGGAAGTCACGATGGTGCATCTGCCACGCGTTGAGGCGACGCTTGCCCCACTGGCGCTCCTGACCAAAACCGTCTGGCTGCCGTGGATCAAACTGGTGAAACCCGACGCGCGTCTTATTCGTCTGTCCGAGAAAACCAATAACTGGACCTTTAACCTCGCGCAAGACAAGAATACGGACCCCAATGCTAAACCTTCCGCCTGGTCCTTCCGGCTGGATAATATTCTCTTCGACCAGGGGCGAATCGCGATCGATGATAAGGTCAGCAAGGCGGATATCACTATTCTGATCGATCCGTTAGGCAAACCGTTGCCGTTCAGCGAAGTGACGGGAACGAAAGGCAAAGCAGACAAATCCACCGTGGGCGACTATGTCTTCGGCCTGAAGGCGCAGGGGCGTTATAACGGGGAACCGTTGACCGGTACGGGGAAAATAGGCGGTATGCTGGCGCTACGCAGCGAAAGTACGCCTTTTCCTGTGCAGGCCGATTTCCGCTCTGGTAATACGCGGGTGGCTTTTAGCGGCGTGGTGAACGAACCGATGAAAATGGGCGGCGTCGATCTGCGGCTTAAATTCTCTGGCGATTCACTGGGCGATTTATATGATTTAACCGGCGTGCTGCTGCCGGATACGCCGCCGTTTGAGACCGATGGGCGATTGGTGGCGAAAATTGACGCCGAAAAGTCATCAGTATTTGATTATCGCGGTTTTAACGGGCGCATTGGCGACAGTGATATCCACGGCTCCCTCACTTATACCACCGGTAAACCGCGCCCTAAACTGGAAGGCGATGTCGAATCGCGCCAGTTACGCCTGGCCGATCTTGGGCCGCTGATTGGCGTGGATTCCGGGAAAGACGCTGAGCAGTCGAAACGGTCTGAACAGCGCAAAGGCGAGAAGAATGTTC |
STM3610 |
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yhjG |
STY4193 |
|
|
|
SPA3466 |
SPA3466 |
|
|
|
yhjG |
SEN3433 |
|
|
|
100 |
100 |
100 |
100 |
8 |
1 |
1 |
1 |
8 |
CHIP6_2212 |
AAGATAAAGAGAGACTCAACATGAAATGGTTATGTTCAGTAGGTGTTGCTGTGAGTCTGGCGATGCAGCCAGCATTGGCGGAAAACCTGTTTGGCAATCACCCGCTGACGCCCGAAGCGCGCGACGCGTTCGTCACGGATTTACTCAAGAAAATGACTGTTGATGAAAAAATTGGTCAGTTACGTCTGATTAGCGTCGGCCCTGATAACCCGAAAGAAGCGATTCGCGAGATGATCAAAGACGGGCAGGTAGGGGCGATTTTCAATACCGTCACCCGCCAGGATATCCGTCAAATGCAGGATCAGGTGATGGCGTTGAGCCGCCTGAAAATTCCTCTCTTTTTTGCCTATGACGTGGTACACGGCCAGCGAACCGTCTTCCCGATAAGCCTCGGTCTGGCTTCTTCTTTTAATCTGGATGCGGTAAGAACCGTAGGACGCGTATCGGCGTATGAAGCGGCGGACGACGGCCTGAATATGACCTGGGCGCCGATGGTGGATGTCTCCCGCGATCCGCGTTGGGGACGCGCCTCCGAAGGCTTTGGCGAAGATACATATTTAACCTCTATCATGGGCGAAACCATGGTGAAAGCGATGCAGGGCAAAAGCCCGGCGGACCGCTATTCGGTGATGACCAGCGTGAAACATTTTGCCGCCTATGGCGCCGTTGAAGGCGGTAAAGAATACAACACCGTGGATATGAGTTCCCAGCGTCTGTTTAATGACTACATGCCGCCGTACAAAGCGGGGCTGGATGCGGGGAGCGGCGCGGTGATGGTGGCGCTGAACTCGCTGAACGGCACGCCTGCGACGTCAGATTCCTGGCTATTGAAAGATGTCCTGCGCGATGAGTGGGGCTTTAAGGGAATTACCGTTTCCGACCACGGCGCTATTAAAGAACTGATTAAACACGGTACCGCGGCCGACCCGGAAGATGCGGTGCGCGTGGCGCTAAAGGCAGGGGTGGATATGAGCATGGCGGATGAGTATTACAGCAAATATCTGCCGGGTCTGATTAAGTCGGGCAAAGTGACGATGGCGGAACTGGACGACGCGACGCGCCATGTGCTCAACGTAAAATATGACATGGGATTGTTTAACGACCCCTATAGCCATCTGGGGCCGAAAGAGAGCGACCCGGTGGACACCAATGCCGAAAGCCGCCTGCATCGTAAAGAGGCACGGGAAGTGG |
STM2166 |
|
|
bglX |
STY2396 |
|
|
bglX |
SPA0685 |
SPA0685 |
|
|
|
bglX |
SEN2160 |
|
|
|
100 |
100 |
100 |
100 |
9 |
1 |
1 |
1 |
9 |
CHIP6_2351 |
GCTTTCATAATGAGGTTAGGATGGACAATTTTCAGAAAGATATTGATGACAGGGCCAATTTAACCCTGTCCAACCGTTTTGAACTGCTGTTATTCCGTCTTGGTACATCGCTGCATGAACAGAAGTCAGAGCTGTTCGGCATCAATGTATTTAAGCTGCGCGAAATCGTACCAATGCCCGCCTTTACGCGCCCGGCAGGCATGAAAGCGCCGCTATTGGGCATGGTCAATATTCGGGATCAGGTCATTCCGGTGATTGATTTGCCAGCGGTAGCGGGCTGCAAGCCGGAAACCGGGCTGAATATTTTGCTGATCACCGAATATGCGCGCAGCGTACAGGCATTTGCCGTCGAGTCGGTGGAAAATATTATGCGTCTTGACTGGCAACAGGTGCATACCGCCGAGAAAGCCGTCAACGGTCGCTACATCACCAGTATTGCCTGCCTGGATGACAACAAAGAAACCAACAACCTGGCGCTGGTGCTCGACGTTGAGCAGATCCTTTATGATATTGTCCCCTCCAGCCACGATCTGCGCGCCACCAATCTGAAGACCAATAAATTTTATATTACCCCAGGCGCGGTAGCCATTGTGGCGGAAGACTCCAAAGTCGCCCGCGCGATGCTGGAAAAAGGGCTGAACGCGATGGGAATTCCGCATCAGATGCATGTGACCGGCAAGGATGCCTGGGAGAGAATCCAGCAACTGGCGCAGGAAGCGGAGGCCGAAGGTAAGCCAATTAGCGAGAAAATCGCGCTGGTCCTGACAGATCTTGAGATGCCGGAGATGGATGGCTTTACGTTAACGCGTAAAATTAAAACCGATGAACGGCTGAAAAAGATCCCGGTCGTTATCCACTCCTCGCTTTCCGGCAGCGCCAATGAAGATCATATACGTAAGGTGAAGGCCGACGGCTACGTGGCTAAGTTTGAGATTAACGAACTCTCTTCGGTCATTCAGGAAGTGCTGGAGCGCGCAGCAACAAACAGCCAGGGACCACTGATCAGCCGC |
STM2314 |
|
|
|
STY2545 |
|
|
|
SPA0549 |
SPA0549 |
|
|
|
- |
SEN2296 |
|
|
|
100 |
100 |
100 |
100 |
10 |
1 |
1 |
1 |
10 |
CHIP6_0293 |
CGTTAAGGAGGTGATAAAAATTGAAAAAGCTGAAACTGCATGGCTTTAACAATCTGACGAAAAGCCTGAGTTTTTGTATTTACGATATCTGCTACGCCAAAACCGCAGAAGAGCGCGATGGCTATATCGCCTATATCGATGAACTCTATAACGCCAACCGACTGACCGAGATCCTGTCGGAGACCTGCTCCATTATCGGCGCAAACATCCTGAACATCGCCCGTCAGGATTATGAACCCCAGGGTGCCAGCGTCACGATTCTGGTGAGCGAAGAGCCGATCGACCCGAAACTTATCGATCAAACCGAACATCCCGGCCCGCTGCCGGAAACCGTGGTGGCGCACCTCGATAAGAGCCATATCTGCGTGCATACCTATCCGGAAAGCCATCCGGAAGGCGGGCTATGCACCTTTCGCGCCGACATCGAAGTGTCAACCTGCGGGGTGATTTCACCGCTAAAAGCGCTCAATTACCTGATCCACCAGCTAGAGTCCGATATCGTCACCATCGATTACCGCGTGCGCGGCTTTACACGCGACGTCAACGGTATGAAGCACTTTATCGATCATGAGATTAATTCTATTCAGAATTTTATGTCGGAAGATATGAAGTCGCTGTATGACATGGTGGATGTAAACGTGTATCAGGAAAATATTTTCCATACCAAGATGCTGCTTAAAGAGTTCGATCTTAAGCACTACATGTTTCACACCAAACCGGAAGATCTCACTGAAACCGAACGCCAGGAGATCACCGCCGCGCTGTGGAAAGAGATGCGCGAGATTTACTACGGCCGCAATATT |
STM0165 |
|
|
speD |
STY0187 |
|
|
speD |
SPA0168 |
SPA0168 |
|
|
|
speD |
SEN0170 |
|
|
|
100 |
100 |
100 |
100 |
11 |
1 |
1 |
1 |
11 |
CHIP6_2609 |
TAAAAGGGTCTCCTCTTGTTGTGATGAGATTCGTATATATTTATATCTTAGTGATTTATGGATCATACTTGTGGTTTTCCTTAGGAGGTAACATGTTTACAATTAATAGTACTAACAGGGTGGCGAGCACAATCGCTCCATATGCATGTGTAAGCGATGTTAATTTAGAGGACAAGGCTACATTTTTAGATGAACATACCTCAATACATGCGAATGATTCTTCTTTGCAATGCTTTGTCTTAAATGATCAGCATGTTCCGCAGAATACATTAGCTACAGATGTTGAAGGCTACAATAGAGGATTACAGGAACGTATAAGCCTCGAGTACCAGCCCCTGGAAAGCATTGTTTTTCTACTCGGCACCCCTGCAGTTTTAGAGACTAAAGAGTCTTTATCATTACCAGTTTCCCCGGATGCTTTAACCCAAAAACTATTAAGCATTAGTAGCAATGATGAATGTAAATTATCAGGTAGCACCAGTTGCACTACCCCAGCCAGTCATAACCCACCGTCCGGTTATATCGCTCAATACAGGCATTCTGCAGAGGTTTTCCCGGATGAATAA |
STM2585 |
|
|
|
|
|
|
|
|
|
--unknown |
|
|
|
|
|
|
|
100 |
60 |
60 |
60 |
12 |
1 |
1 |
1 |
12 |
CHIP6_1442 |
GCATTACTGGAGATTATAGGTTGATCTGGAAACGTGAAGTGACCCTCGATGCGCTTAATGCGATGGGGGAAGGGAATATGGTTGGCCTGCTTGATATCCGCTTTGAGCGTATTGGGGACGATACGCTGGAAGCGACAATGCCCGTCGATCATCGCACCAAACAGCCGTTCGGCTTGCTGCATGGCGGAGCGTCTGTGGTGCTGGCGGAAAGTATCGGCTCGGTCGCAGGTTATCTGTGTACGCAGGGGGAGCAAAAGGTGGTGGGGCTGGAGGTGAATGCCAACCATGTACGGTCGGCGCGTCAGGGGCGCGTACGAGGCGTCTGTAAAGCGTTGCATACCGGGGCTCGCCATCAGGTCTGGCAGATAGAGATCTTTGATGAACAGGGACGTCTGTGCTGTTCTTCGCGTCTTACTACAGCGATTGTGTGA |
STM1366 |
|
|
|
STY1757 |
|
|
|
SPA1489 |
SPA1489 |
|
|
|
- |
SEN1679 |
|
|
|
100 |
100 |
100 |
100 |
13 |
1 |
1 |
1 |
13 |
CHIP6_1663 |
GAAGTCTAAGGGATAACAACGTGGCAAAATCTCTCTTGCGCAGCGGCAATCTGGATGATTATCAGGCCGTGGGCGGCGGCGGTCAGGCCGTATTTGAATCAGCATTGCAAATTCGCGAAACGCTTCGTCTGCGTAAACAGCAGGCGATGGTTGACTGTCTGGCGATTCCGCAACTTAACGATAATGGCGATCGGGTTGACTGGTATTCGCCGATTGAAGGTCAGGCGATAGCGTGGAAAGCGGCTGACGAAGAGACACGTTCTCGGGCTTTACGTTATTTAGCCAGCACTTTTGAAAGCGCGGCTGCACTCAGTCGCAAAAGTCTGCAATCCGGTAAAACAGCGCTCCAGCTATTTGGTTCGCTACTTGAGAAAGCGACGCAATTTCCCGGTGAAAATCATGTTTTCCTGGTTAACGGCAAACCGGTTATCACCTTCTGGGGATTCGTTAATCTCAACGAAAATACACGCGATGATGTGCTGGACTGCCTGCGGGTAACCGAGGCAATCCCCGACATCCCTCTGGTCGAGCCGGAGCCCGAAGAAAAGCCGCTGGTAGAGGCGGCATTTAGTCAGGCGGATGAACCTTTGTTAACGTCTGTCATTGAGCCGCCGAAAATGCCGGAGGAACCTGCTGCGCCGCCCGTTATCGTTAGCGAGCCGAAGCCTGCCGCACCTATCCCGGTTGCTGAGGCGAAAAGAGCTCGTCGTCTACCGCTGTGGAGCTTACCTGTCGCTGCCGTGGTTATCGCCGCCGTCGCCACGCCTTTTTTCTGGCCATCTTCATCCGTTGACGGGGCCTCTCCTGTTCGCGCCGCGCCTGTCGCTACCGCGAAAACTGACGTTACCCCCTTGCCTGAACTCACCGCGCATTTGCCGCTGCATCGCGCTGAGGTGACGCCCGCCCCCAAAGCGGCGCCGTTGCCGGAAGCGCCTGTTATCATTGCCGCTATCCCCAAAGACGCGCTGGTGATGGACAATACGCAGATGAAGCTTGGAACCACGCGCTTTTTAAACGGTAGCTGGCGCATCAGTGTGGATGTCAAAGATCCGATTACCGGCAAGCCGCCCTCTCTGCGTTATCAGATCCAAAATAACAAAGGCATCGCGCGCGTAGTACATGGCGATAACGTGGTTTGTCGGGCGGAAATTTTCTCTGGTCTGCATCAAACGGGCGAGCTGATGATTAAAAGTCGCGGCA |
STM1593 |
|
|
srfA |
STY1472 |
|
|
srfA |
SPA1275 |
SPA1275 |
|
|
|
srfA |
SEN1462 |
|
|
|
100 |
100 |
100 |
100 |
14 |
1 |
1 |
1 |
14 |
CHIP6_3663 |
TTAATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGCAAATTGCTGGCTGACGCGGGGATACAACTGACGTTTGCGGATGTAAACCAGGTCGTACTCGATGCCCTGAATGCCCGTCATAGCTATCAGGTTCATGTTGTGGGTGAAAATGAGCAGGTGGATACCGTTTCCGGCGTCAACGCTGTCAGCAGCATCGGCGATGATGTTGTCGACCTGATTGCCCACGTTGATTTAATCACCACTGCCGTGGGCCCGGTGGTGCTTGAGCGTATCGCTCCGGCTATCGCTAAAGGGCTGGTAAAACGTAAGGCGCAGGGCGTGGATGCCCCGCTGAATATCATCGCCTGTGAAAATATGGTGCGCGGCACCACGCAGCTGAAAGGCCACGTAATGAACGCGCTGGCGGATGGCGATAAAGCCTGGGTTGAACAGCACGTCGGTTTTGTCGATTCCGCCGTTGACCGTATTGTGCCGCCATCTGCTTCTGCGACCAACGATCCGCTGGAAGTGACGGTAGAAACGTTCAGCGAGTGGATTGTCGATAAAACCCAGTTTAAAGGCGCGTTGCCAAACATTCCGGGGATGGAGTTAACGGATAACCTGATGGCATTTGTCGAACGTAAACTCTTCACGCTGAACACAGGTCATGCTATAACCGCGTACCTCGGCAAATTAGCCGGTCATCAAACCATTCGCGACGCTATTCTCGATGAGAGTATTCGCGCGGTGGTGAAAGGCGCGATGGAAGAAAGCGGCGCGGTGCTGATCAAACGCTACGGTTTTGATGCCGACAAACATGCGGCATACATTCAGAAAATCCTCGGTCGTTTTGAAAACCCGTATCTGAAAGATGACGTCGAACGCGTAGGTCGTCAGCCGCTACGCAAACTCAGCGCGGGCGACCGTCTGATCAAACCGCTGCTTGGCACCCTGGAATATGGTCTGCCGCATGTAAATCTGGTCAAAGGGATCGCGGCGGCGATGCATTTCCGTAGTGATGAAGATCCGCAGGCGCAGGAGTTGGCGGCTCTGATTACCGAAAAAGGCCCGCAGGCCGCGCTGGCGCAAATTTCCGGGCTGGATGCCAATAGCGATGTGGTGGCGGAGGCGGTTAACGCATATAACGCGACCAAATGA |
STM3686 |
|
|
mtlD |
STY4110 |
|
|
mtlD |
SPA3538 |
SPA3538 |
|
|
|
mtlD |
SEN3508 |
|
|
|
100 |
100 |
100 |
100 |
15 |
1 |
1 |
1 |
15 |
CHIP6_2366 |
CCGCCAGTAAGTGAAAAATTATGATAAATGCAAATCGTCCGATAATTAACCTCGATCTCGATCTGCTGAGAACGTTCGTGGCCGTTGCCGATCTGAACACCTTCGCCGCGGCGGCGGCGGCGGTATGTCGTACTCAGTCTGCGGTCAGTCAGCAAATGCAGCGTCTTGAGCAACTCGTGGGAAAGGAATTGTTCGCCCGCCATGGCCGTAACAAACTTTTGACCGAACACGGTATCCAGCTTCTGGGGTACGCCAGAAAAATCCTGCGTTTTAATGATGAGGCGTGTTCATCATTAATGTTCAGTAATCTTCAGGGAGTGTTAACAATCGGCGCTTCTGATGAATCAGCTGATACTATCCTGCCTTTTTTGCTTAGCCGAATCAGCTCGGTTTATCCGAAACTCGCGCTTGATGTACGGGTAAAACGCAACGCCTATATGGTGGACATGGTTAAATCGCAGGAAGTAGATTTGGTGGTGACGACTAACCAACCTCATTCGCTGGACTGTCTGAATTTGCGGACCTCGCCCACCCATTGGTATTGTGCGGCTGAGTATGTTTTGCAAAGGGGAGAGCCCGTACCACTAGTCCTGCTGGACGATCCCAGCCCATTCCGCGATATGGTGCTGGAGACGCTAAATGCAGCGGGTATTCCCTGGCGGCTGGCCTATGTGGCGTCTACATTACCGGCGGTACGCGCGGCCGTTAAAGCCGGTCTTGGCGTAACGGCTCGACCTGTCGAAATGATGAGTCCCGACCTTCGCGTGCTGGGCGCCGCAGACGGATTACCGCCTTTGCCGGATACGGAATATCTGTTGTGCCGCGATCCCAATAGCCAGAACGAGCTGGCGATGGTGATTTTCCATGCGATGGAAAGCTACCAAAACCCATGGCATTACAACCAGTTTTCTGCAGAGGGCGGAGATGATCCGCTGATGGTGGAAGGGGGTTTTGAGTAG |
STM2330 |
|
|
lrhA |
STY2560 |
|
|
lrhA |
SPA0534 |
SPA0534 |
|
|
|
lrhA |
SEN2312 |
|
|
|
100 |
100 |
100 |
100 |
16 |
1 |
1 |
1 |
16 |
CHIP6_0454 |
ATCGCTAGGGAGTTGTTGAGATGAAAATGGATACCCGACATTCCGCATTATATTACTTAATAGTTTTTCTATTCCTGGCCCTACCCGCCACAGCATCGTGGGCGAGCGTTACTATTTTGGGTAGCCGAATAATTTACCCATCAACAGCCTCCTCCGTAGATGTGCAGTTAAAAAATAATGATGCAATACCTTATATCGTACAAACCTGGTTTGACGATGGCGATATGAATACCAGCCCGGAAAATAGCAGCGCGATGCCATTGATTGCCACGCCGCCGGTATTTCGTATTCAACCCAAAGCAGGCCAGGTTGTACGCGTAATTTATAACAACACGAAAAAATTGCCGCAGGATCGTGAGTCAGTATTCTGGTTTAACGTATTACAGGTACCACCAACGAATATTGGCAGCGACAGCGGGCAAAATAAAATGTTGGTGATGCTGCGCTCAAGAATAAAACTTTTCTATCGTCCTGACGGGCTAGGTAAACCTGATAATCTGGCGAAAAAACTACAGATTAAAACGGTAAATAAGGGTTCCGGAAAAAGCGGTATTGTTATTGTTAATCCGCAGCCCTGGTTTGCCTCTTTAAGTAACCTGAATGTAAAAGTGAACGGCGCTTCGTATAACCTGGATGCTGACATGATTGCCCCTTTCTCCAGTCAAACCTGGTGGCTGCCGGGCAAACGGTCACTCAAATCCTTCTCCGGTACAGTCACCGTTACTTTGGTTAACGACCTGGGCGCAAGGATAAGCGAGAGCTACGATGTCCCCCACCATTAA |
STM0339 |
|
|
stbB |
STY0372 |
|
|
stbB |
SPA2380 |
SPA2380 |
|
|
|
stbB |
SEN0322 |
|
|
|
100 |
100 |
100 |
100 |
17 |
1 |
1 |
1 |
17 |
CHIP6_4011 |
AAAGATTTTGGGAGCAAGCGATGCGCAAAGTTACCGCTGCTGTTATGGCCTCAACGCTGGCATTCAGTTTTTTAAGCCACGCAGCTGAAGTTGTTACAAGCGATAACTGGCACCCCGGTGACGGGGCCACGCAGCGTAGCGCGCAAAATCATATGTTTGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCAAGGCACGAACAGCCTCCTGTTAATGTTAGCGAAATGGAGACAATGCATCGGCTTGTCACCGCAGAAAAATTTGATGAAAGCGCTGTGCGCGCTCAGGCAGAAAAAATGGCGCAAGAGCAGGTTGCCCGCCAGGTCGAAATGGCCCGCGTGCGTAACCAGATGTATCGCCTGTTAACGCCGGAGCAGCAAGCGGTTTTGAATGAAAAGCATCAGCAACGAATGGAGCAACTGCGCGACGTGGCGCAATGGCAAAAAAGTTCATCGTTGAAATTATTGAGTAGTAGCAACTCACGTTCCCAGTAA |
STM4060 |
|
|
cpxP |
STY3811 |
|
|
cpxP |
SPA3903 |
SPA3903 |
|
|
|
cpxP |
SEN3850 |
|
|
|
100 |
100 |
100 |
100 |
18 |
1 |
1 |
1 |
18 |
CHIP6_2284 |
GCCTGATTTGGTGGAGAAAGTTGATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGGGCATGGGCGGCGAGTGATAGCTCAGGAGTGGACTATTCGCCTATAGCTGCTGGGTTTAAAGGGCTTCTTCCCTATACCTGCAAGACACGTGTGGCTTGTTCTGATAATGACGCATTAATTGTTGAGGGGTGTCTTGCTCGTTTAAAGCAAAAAAGGCCTGATGAGCATTCGCTTCTTGTGGCACATTATTTATACAGAATATCCAAGCGTAAGATTGCAAAGGTGCGTGGGAAGGATGAGAAATTGGTACGTATAGAAATACAGTTAGCCGAAGGATTTATTGATGGCTGCCTTTCAATGCTGGATCTAACAT |
STM2239 |
|
|
|
|
|
|
|
|
|
--unknown |
|
|
|
|
|
|
|
100 |
60 |
60 |
60 |
19 |
1 |
1 |
1 |
19 |
CHIP6_2581 |
GCTCGTTAGGGCATCTTTTTATGCAGCAACCTGTTGTACGCATTGGAGAGTGGCTGGTTACACCTTCTGTTAATCAGATCAGTCGTCAGGGACGCCAGATTACTCTTGAACCACGGCTGATCGATCTTCTGATGTATTTTGCGCATCACCCGGATGAAGTGTTAAGCCGGGATAACATTATTGATCATGTCTGGATGCGCACCATCGTGACCAACCATGTTGTCACCCAAAGCATTTCTGAACTACGCAAATCATTAAGAGATGGCGGAGACAGCAATGCTGAATACATCGTTACCGTACCTAAACGCGGCTATAAGCTGACGGCGCCGGTTATCTGGTGCGAAGAAAATAGCGATGAGATCGATAATTCATCAACGTCGCCGCCGCCGCCGATCGCAGCGACGAATGCAGAACCGACGGAGGGGGTTACTGCCGCTACGCCTGTGCCGCCCGCCTCTTTGCAAACGCCGACTAAAAAGGCGAAAAAGCCGCGTATTGCCGCTTTCTGGACGTGGGTGATGTTCCTGCTCTCGCTGGCGACGCTGGTGGTGTTTATCGTGATGTCGGTGGTAGATCATAATGCCGCGGTAACAAAAACGCGGTTATTACTTAACCCACGAGATATAGATGTTCGTTTTGAAGGCGGCAATTCCTGTAATAACTGGGTCTCGCAGGAGTCCTACGCCATCGGTCTGGGCGGCTTAATCACCGACCTGCTGAACACCTACTCGACTTTTATGGTGCACGATAAAACCAATTACCGGGTCAATGAGCCAAGCAGCTCCGGTAAGACGTTAACCATTCAGTTTGTCAATCAGCGCCACTATCGGGCGCAGCAGTGCTTTATGTCTGTAGTGCTCATTGATAACGCCGATGGTTCAACCATGCTGGATAAGCGTTATTTCGTCACCAATACTAACCAGTTGTCCATCCAGGATGATCTGTTTAATAGCCTGTCTTTCGTTTTAACACAGCCCTGGCCTAATCGTATGCGAGAACAACTGGCCCTGTTCAGAACGCCGCAAAATACCGCACTGATGCGTTTTTATGAGGCGCGCCAGCTTATTCTGAGCGGCGATGCGCAGGCGCTAGGTAAAGCCAGCGATATTCTGAATGGCATTATTAAGGAAACGCCTGATTTCAACTATGCCTATGAATATAAAGTGCTGGTAGATGTATTACGGCAATCACAGCAGC |
STM2557 |
|
|
cadC |
STY2804 |
|
|
cadC |
SPA0309 |
SPA0309 |
|
|
|
cadC |
SEN2537 |
|
|
|
100 |
100 |
100 |
100 |
20 |
1 |
1 |
2 |
1 |
CHIP6_4402 |
ATCAGTAGTAAAGATAACCATAATCACACGTTGGTGTTTACAGGCAAGGGCGGAAAGTATTTTGTTATTTGCCTTGTGAATTTCTTGTTGACGTGTATCACGTTGGGAATCTATGCGCCGTGGGCGATGGTGAAATGTCGACGTTATATTTATACTAACATGACGCTAAACAATCAGCCTTTTGCTTACAAAGCCACGGGCGGCGCATTATTTATTAGTGTGTTGTTAGTTTTTATTATTTATATTGTTAGCCTCTCTCTTATTGAACACGGTCATCCCGGTCTCGGTTTTACGCTATTCGGCTTATTAATTGCGATTATTCCTTTTATGGCGGTGAAAGGATTACAGTATCAGGCGATGATGACTTCGCTTAATGGCGTACATTTTGGATTCCAGTGTTCCATGCGGCGCGCCTGGTGGTACATGTTCGCTCTTCCTGTACTCCTGATGGTGGCGCTTTATATTGTTCTTTATATTATCTCACTGGTAACCATCGCCGTCGGCGGTTTAGTGTTCAGTATCGTTTTTCTCGGTTTGCTGGCTATTATTGGGATAGGGGTCATTAACGGTATTACCTACAGCAAATGGATGACCTTGTTTGGTAATGGCGCAAACTTTGGCATTCATCGTTTCTCGATTCAGGTTAATGTTAAAACGTGCATCAGAGGGTGCGTGTTGGCAATGTTGACCCTTTTCCCTTTTGCTGTCGTGATTGGTTATCTAATCGCGCCGGTGTTCACCGACATGATTCTTTTGAGTATGATGGGGAATGCGCAGGCAGGAGGGGCGCTTATTCTGCAATATTATGGCCAGATAATGGCATGTTATTTCCTCTATTTTCTCGCGATTATTGTGGTAACCAGTTACTTATATGTGGCGTTACGCAACCTGTTTTTAAACAATTTGTCACTGGCGAACGATTCGATTCGTTTTCATTCCTCTGTCACTGCACACGGTATGCTGTGGCGGTTACTGGTGGTGTTTGTGATTTCCGGCGTGACCTTAGGGCTGGCTTATCCGTGGTTGAAAATTTGGCTGGTGAGCTGGCTGGCGCAGAATACACAGGTCCAGGGCGATCTGGATTCGCTTGAGTTAACCAATGATGAGAAGCCGCTGGAAAACAGCCCGCTAATGTGGATTTCTCGTGGCATTATGC |
STM4474 |
|
|
yjgN |
STY4813 |
|
|
|
SPA4275 |
SPA4275 |
|
|
|
yjgN |
SEN4227 |
|
|
|
100 |
100 |
100 |
100 |
Total number of rows: 17328
Table truncated, full table size 13903 Kbytes.
Supplementary data files not provided |
|
|
|
|
|