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Platform GPL6954 Query DataSets for GPL6954
Status Public on Jul 02, 2008
Title OSU RIGUA (Ruminant Immuno-inflammatory Gene Universal Array)
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Ovis aries
Manufacturer Edinburgh Research and Innovation, The University of Edinburgh
Manufacture protocol Researchers at the University of Edinburgh have constructed a microarray to allow investigation into a large set of immuno-inflammatory genes regulated in response to disease, vaccination and therapeutic interventions in ruminants. Specifically designed to investigate the host response to infection by Mycobacterium avium subsp. paratuberculosis (Johne's disease), the microarray can also be applied to other disease states in ruminants. The array will also provide information on selectable traits that may confer resistance to Johne's disease and responses to vaccination. The gene array consists of approximately 600 ruminant immuno-modulatory genes backed up by a database and management system to allow full interrogation of experimental data.
The full array, or RIGUA (Ruminant Immuno-inflammatory Gene Universal Array), consists of some 600 ruminant genes each represented by two non-overlapping 75-mer oligonucleotides. These have been selected to enable investigations into the immune response to infection and other challenges, including vaccination, in ruminants. It will therefore be useful in defining those genes involved in the development of disease, which have an immuno-inflammatory component thus contributing to animal improvement and breeding. It will also be useful in vaccine and adjuvant response studies in the development of vaccines to ruminant disease.
 
Description For additional information please contact Prof. John Hopkins or S. Rhind at The University of Edinburgh
 
Web link http://www.research-innovation.ed.ac.uk/records/opportunities/genemicroarray.asp
Submission date Jun 11, 2008
Last update date Jul 02, 2008
Contact name Ruth Cecilia Galindo
Organization name Instituto de Investigacion en Recursos Cinegéticos
Department Animal Health
Lab Genomic
Street address Ronda de Toledo s/n
City Ciudad Real
State/province Ciudad Real
ZIP/Postal code 13005
Country Spain
 
Samples (15) GSM298718, GSM299089, GSM301412, GSM301413, GSM301414, GSM301415 
Series (2)
GSE11928 Differential expression of inflammatory and immune response genes in rams experimentally infected with Brucella ovis
GSE13202 Protective response to Brucella infection

Data table header descriptions
ID Spot Index Number
Block Spot block number
Column Spot column coordinate
Row Spot row coordinate
Probe_ID Probe ID
GB_ACC Genbank Accession Number
SPOT_ID
Description Descriptive gene name, from UniGene
SEQUENCE Oligonucleotide sequence

Data table
ID Block Column Row Probe_ID GB_ACC SPOT_ID Description SEQUENCE
1 1 1 1 Landing lights --Landing lights unknown (4I12) CCCCACCGGGGTGCAAGCCTCACTATTACTTGAACTTTCCGAAACCTAGAGAGGAAAAGTGCAATGAGTGTTGTA
2 1 2 1 Landing lights --Landing lights unknown (4I12) TTGCTGCGTGGAATGTGAGAGTGTGTGCGTGAAAGAGATGAGTTGCCTCTTGTGGAAGAAGAAAACACCGTGTCT
3 1 3 1 Landing lights --Landing lights unknown (4I12) GCCCATAAAGCACTCTGTTCTGAGAAGCTGGATCAGTGGCTCTGTGAGAAGTTGTGAACACCTGCTGTCTTTGCT
4 1 4 1 Rigua_2036 Y09472 Cathelicidin -1 GGCCCTGTAGTGGCGATGGACATGTAAGGACTAATCTCTAGGGATGCATGAATGGTGCTCGGGACATTTGACCCT
5 1 5 1 Rigua_2034 M36271 transforming growth factor-beta 1, 3 end AGTCTCTGCTCAACTGCACCTCAGTTTCTTCTTTATCCCCAAACTGGAGAAAAAGCTTCAGCCCCCATCCTACCT
6 1 6 1 unknown --unknown (3I20) unknown (3I20) CGGAAACGATGGCAGAACATGAAATTCGGGGCTGATATCCAGGATGACTACGAAGACGAAAATCTCTATGAGGGC
7 1 7 1 unknown --unknown (3E24) unknown (3E24) AGATGCTCAGCTGGAGAAGCCGTGACCTGCTGGGCTGACCCGCCATGCAAACAACCCAGTGTTTCACCCTACTTC
8 1 8 1 Rigua_3006 Hsp65 Hsp65 GCTGTGCTTCGTGCTGTGGATCAGCTCAATGAGAAGTCCTCAGAAGCTAATCTCTACCGCCTCCTGGAGCTAGAC
9 1 9 1 Rigua_0158 L25886 CD49b GGGTAGGAAGATAGCACATGGTGTGAAGAAGTATGGCCCAACTGTTCTCCGAATAATCAGAATAGCTGGGTGAAT
10 1 10 1 Rigua_0191 AF305563 peroxiredoxin 4 AGCCCGCGGAGCAGTGTGACTTCAAGGAGAATGGGCTGCTGAAAGAGTGTGTGGGGACAGTCACCTTGGACCAGG
11 1 11 1 unknown --unknown (3A20) unknown (3A20) CTGGGCCAAGGCCAATTCCAAGGCCATTGTGAAAATCATTGGGAACGCCAACATCAAGGTTAGCACTACGGCCAA
12 1 12 1 unknown --unknown (3E16) unknown (3E16) CAGTGAAGAATTGGTTGACATCACACCCATTAAAGAATTTTGATGAATCCTGGGTCCACAGAAGGGTCCTAAGGG
13 1 13 1 Alien Spotreport6 --Alien Spotreport6 unknown (4E8) CAGCCGACGGCAGACAACGCCTACGAGTACTTCACCAAGATCGCGTCCAGCCTGTTTGAGAGCGGCATCAACTGG
14 1 14 1 Rigua_0543 BG937885 CD59 CAGCCCTGGACTTGGGGAACGCCCCCATCAAGAACGTAGCCATAGTTCTGGCTGTGGTTCTGTTGGGCCAGTTTG
15 1 15 1 Rigua_0162 L26547 CDK1 TCAGCGTCTGTCTGGAAGCTGAGCCACGGGGTCCTGGACTCACATCTTATTGTCATGAAGCCGTGTCCGCATCTC
16 1 16 1 Rigua_0587 AX244221 CCR11 AAACAGTTCTTACACTCTCAGCGGCATCTTTTCCTCCTATCTCAGCTCCACTGCTTGACTGACTCCATGAGGTGG
17 1 1 2 unknown --unknown (3I24) unknown (3I24) CTCCACGTCCTCTCGGGCTGCTGGGACGAGTACGTGATCGACATCTTCACACAGATCGCGTCCTTTGTGGCTTAC
18 1 2 2 unknown --unknown (3M24) unknown (3M24) AGGTGCTGCGTAACAACGAGATGCAGAAGTTCAAGGAGATCCAGACTGAGAGGAAGGCCACGCTGCTGGTCCTGG
19 1 3 2 unknown --unknown (3E24) unknown (3E24) CATCTTGTTTACATCCATTATCCAGCAGAACCACTGGTCCTTTGGTGACGCTGCCTGTCGAATCCTGCCCTCTCT
20 1 4 2 Alien Spotreport7 --Alien Spotreport7 unknown (4I8) CTCCGCCAAGACGCTCAAGGTGGTGGTGGCCGTGGTGACCAGCTTCTTTGTCTTCTGGCTGCCCTACCAGGTGAC

Total number of rows: 4096

Table truncated, full table size 302 Kbytes.




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