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Platform GPL7265 Query DataSets for GPL7265
Status Public on Oct 08, 2008
Title Agilent-011839 Arabidopsis 2 Oligo Microarray G4136A (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4136A
 
Description
Replaced by 013324, G4136B. The content on this microarray is derived from the ATH1 v. 3 database of The Institute for Genomic Research (TIGR) and represents 21,500 genes. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL888.
 
Submission date Sep 09, 2008
Last update date Apr 06, 2012
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (16) GSM778817, GSM778818, GSM778819, GSM778820, GSM778821, GSM778822 
Series (2)
GSE31396 Effect of bacterial ACC deaminase on plant gene expression
GSE59556 Transformants of wheat GSK3/Shaggy-like kinase TaSK5 vs wild-type Col-0
Relations
Alternative to GPL888

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_84_P10000 A_84_P10000 FALSE unmapped CTACATTGGTACAAAGACTTATTCCCGGAGGAGATTCCACCCGGACTACCACCTATTCAC
A_84_P10001 A_84_P10001 FALSE NM_102184 NM_102184 838944 AT1G23350 invertase/pectin methylesterase inhibitor family protein At.41554 ref|NM_102184|gb|AK175880|ta|TA46278_3702|ta|CD533988 chr1:8293773-8293714 Arabidopsis thaliana invertase/pectin methylesterase inhibitor family protein (AT1G23350) mRNA, complete cds [NM_102184] GO:0004857(enzyme inhibitor activity)|GO:0008150(biological_process)|GO:0012505(endomembrane system)|GO:0030599(pectinesterase activity)|GO:0046910(pectinesterase inhibitor activity) AGGAGGTCAACGTCATTTATAAATCCGCCGGGGTTTTGTACCGTATGGCTGATAATTGCT
A_84_P10002 A_84_P10002 FALSE NM_116719 NM_116719 825818 AT4G04810 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein At.33960 ref|NM_116719|tc|NP033582|ta|N97075|tc|TC342173 chr4:2442151-2442210 Arabidopsis thaliana methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (AT4G04810) mRNA, complete cds [NM_116719] GO:0005829(cytosol)|GO:0008113(peptide-methionine-(S)-S-oxide reductase activity)|GO:0008150(biological_process) GGGAACAGAAGAATATGACAAGTTCTTTGAGGAAGGAATCTTCAGCTGCATCGGATGCAA
A_84_P10003 A_84_P10003 FALSE NM_116748 NM_116748 825853 AT4G05090 inositol monophosphatase family protein At.33920 ref|NM_116748|gb|AK175301|ta|TA43475_3702|ta|CNS0A2VL chr4:2611530-2611589 Arabidopsis thaliana inositol monophosphatase family protein (AT4G05090) mRNA, complete cds [NM_116748] "GO:0004437(inositol or phosphatidylinositol phosphatase activity)|GO:0006790(sulfur metabolic process)|GO:0008441(3'(2'),5'-bisphosphate nucleotidase activity)|GO:0009507(chloroplast)" AGGCTCATTTTTCCGGCGGGCGGTGTTGTAGTAAGCAACGGAAGTTTACATAATCAGATT
A_84_P10004 A_84_P10004 FALSE NM_116765 NM_116765 825874 AT4G05260 ubiquitin family protein At.54160 ref|NM_116765|tc|TC348133 chr4:2694312-2694371 Arabidopsis thaliana ubiquitin family protein (AT4G05260) mRNA, complete cds [NM_116765] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0006464(protein modification process) TAAGGGATCATTTAGATCGGCCTCAAGATGGTGATTATTTCTTCGTACACAAAGGGAGAG
A_84_P10005 A_84_P10005 FALSE NM_116785 NM_116785 825896 AT4G05460 F-box family protein (FBL20) At.48830 ref|NM_116785|ta|TA33636_3702|tc|TC348155|tc|TC344712 chr4:2761185-2761126 Arabidopsis thaliana F-box family protein (FBL20) (AT4G05460) mRNA, complete cds [NM_116785] GO:0004842(ubiquitin-protein ligase activity)|GO:0006511(ubiquitin-dependent protein catabolic process)|GO:0009507(chloroplast) TGTCAGGTGATGATGATTTTGAGGGTTACTATGACTTCTCAGGTGCTAGTGACTTTTCTG
A_84_P100056 A_84_P100056 FALSE NM_001036470 NM_001036470 819207 AT2G45990 hypothetical protein At.24763 ref|NM_001036470|ref|NM_130162|ref|NM_001036469|ref|NM_180112 chr2:18928138-18928197 Arabidopsis thaliana unknown protein (AT2G45990) mRNA, complete cds [NM_001036470] GO:0003674(molecular_function)|GO:0008150(biological_process)|GO:0009507(chloroplast)|GO:0009570(chloroplast stroma) GAAACAAAGCTTTCCTCTTTATTGTATTCTACGGCATTCAACGGAAACTAAAAACCAAAC
A_84_P10006 A_84_P10006 FALSE tc|TC348000 unmapped GTCGAGACATTGAAGAGAAAGATGACGGAGTTCCTCACACAGCTTCCCCAAAATGATGAT
A_84_P10007 A_84_P10007 FALSE NM_001036517 NM_001036517 826386 AT4G08320 tetratricopeptide repeat (TPR)-containing protein At.71009 ref|NM_001036517|ref|NM_116901|ta|TA37752_3702|ta|TA37751_3702 chr4:5254909-5254968 Arabidopsis thaliana tetratricopeptide repeat (TPR)-containing protein (AT4G08320) mRNA, complete cds [NM_001036517] GO:0005488(binding)|GO:0005575(cellular_component)|GO:0008150(biological_process) TGGAGGATCAATGGGAGGCACTGGTAACAATAATCCTCAAGATTCTAATGGTGCACAAGG
A_84_P10008 A_84_P10008 FALSE NM_001084888 NM_001084888 826420 ORTHL ORTHL (ORTHRUS-LIKE); ubiquitin-protein ligase/ zinc ion binding At.33741 ref|NM_001084888|ref|NM_116928|gb|AK175637|ta|TA47992_3702 chr4:5464191-5464132 Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (AT4G08590) mRNA, complete cds [NM_001084888] GO:0004842(ubiquitin-protein ligase activity)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0016567(protein ubiquitination) CACCTGCAAATCATGAGCAGAGGGAGAGAATGAAGATGGCTATGACATGTCTTCTCCTTT
A_84_P10009 A_84_P10009 FALSE NM_116956 NM_116956 826458 AT4G08870 arginase, putative" At.4188 ref|NM_116956|ta|TA31938_3702|ta|CNS0A2DU|ta|BP660521 chr4:5646712-5646653 Arabidopsis thaliana arginase, putative (AT4G08870) mRNA, complete cds [NM_116956] GO:0004053(arginase activity)|GO:0005739(mitochondrion)|GO:0006595(polyamine metabolic process)|GO:0008783(agmatinase activity)|GO:0009507(chloroplast) ACATGACGGCAATGGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAAT
A_84_P10010 A_84_P10010 FALSE NM_116977 NM_116977 826486 TOC75-IV TOC75-IV At.50329 ref|NM_116977|ta|AY585655|ta|CNS0A4MU|tc|TC347423 chr4:5805976-5806035 Arabidopsis thaliana ATTOC75-IV/TOC75-IV (TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV) (ATTOC75-IV/TOC75-IV) mRNA, complete cds [NM_116977] GO:0009662(etioplast organization)|GO:0009707(chloroplast outer membrane)|GO:0031359(integral to chloroplast outer membrane)|GO:0045036(protein targeting to chloroplast) ACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGCGAGCTGAATATACTGT
A_84_P10011 A_84_P10011 FALSE NM_117003 NM_117003 826517 AT4G09350 DNAJ heat shock N-terminal domain-containing protein At.33701 ref|NM_117003|ta|TA48519_3702|ta|CNS0A4HK|ta|AK175888 chr4:5931441-5931382 Arabidopsis thaliana DNAJ heat shock N-terminal domain-containing protein (AT4G09350) mRNA, complete cds [NM_117003] GO:0006457(protein folding)|GO:0009507(chloroplast)|GO:0031072(heat shock protein binding) GGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAGCAATGACTGCTCTCACGTTCGATA
A_84_P10012 A_84_P10012 FALSE NM_117028 NM_117028 826545 GASA3 GASA3 (GAST1 PROTEIN HOMOLOG 3) At.24572 ref|NM_117028|gb|BX829024|ta|TA41557_3702|ta|T88426 chr4:6073471-6073311 Arabidopsis thaliana GASA3 (GAST1 PROTEIN HOMOLOG 3) (GASA3) mRNA, complete cds [NM_117028] GO:0003674(molecular_function)|GO:0009739(response to gibberellin stimulus)|GO:0012505(endomembrane system) TTCTGCCTCACCACTTTTGAGCTTCATGTTCATGCTGCTGAAGATTCACAAGTCGGTGAA
A_84_P10013 A_84_P10013 FALSE NM_117062 NM_117062 826584 AT4G09940 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein At.54247 ref|NM_117062|ta|DQ056647|tc|TC347046 chr4:6233333-6233392 Arabidopsis thaliana avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (AT4G09940) mRNA, complete cds [NM_117062] GO:0005525(GTP binding)|GO:0005886(plasma membrane)|GO:0009617(response to bacterium) CAAGGATAAAACAAATGGCCACGGATCTTCAAAAATCCAAGCAGTGGTGCATCATTATGT
A_84_P10014 A_84_P10014 FALSE NM_117084 NM_117084 826607 AT4G10160 zinc finger (C3HC4-type RING finger) family protein At.33649 ref|NM_117084|ta|TA52759_3702|tc|TC346609 chr4:6336160-6336219 Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (AT4G10160) mRNA, complete cds [NM_117084] GO:0004842(ubiquitin-protein ligase activity)|GO:0005515(protein binding)|GO:0008270(zinc ion binding) AATACCAACGTTGATTGGTCTTCTCTTGGTGGCTTCGTGCCCACCAACAATAATCTCTCA
A_84_P10015 A_84_P10015 FALSE NM_117113 NM_117113 826637 AT4G10450 60S ribosomal protein L9 (RPL90D) At.24000 ref|NM_117113|ta|TA28750_3702|ta|DR328274|ta|CA781984 chr4:6463935-6463876 Arabidopsis thaliana 60S ribosomal protein L9 (RPL90D) (AT4G10450) mRNA, complete cds [NM_117113] GO:0003735(structural constituent of ribosome)|GO:0006412(translation)|GO:0015934(large ribosomal subunit)|GO:0022625(cytosolic large ribosomal subunit)|GO:0022626(cytosolic ribosome) GGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAGCTTGTTTCACGGTCTTGTGC
A_84_P100156 A_84_P100156 FALSE NM_119776 NM_119776 829766 AT4G36100 hypothetical protein At.19075 ref|NM_119776 chr4:17083202-17083761 Arabidopsis thaliana unknown protein (AT4G36100) mRNA, complete cds [NM_119776] GO:0005777(peroxisome)|GO:0006904(vesicle docking during exocytosis)|GO:0016192(vesicle-mediated transport) GCTGAACGTTTCTTTAGCAGCAAACTCAGCCAGCAAAAGTCATATTGCTCTATGGCCAGT
A_84_P10016 A_84_P10016 FALSE tc|NP040698|tc|TC346304 chr4:6585707-6585889 GB GACTTGAAGAAAGATGTTCTTAGGGTTGACTCAGTTCCAACAAATGCTGGAGGATGGGAG
A_84_P10017 A_84_P10017 FALSE NM_100509 NM_100509 837138 AT1G06270 pentatricopeptide (PPR) repeat-containing protein At.28507 ref|NM_100509|ta|TA41897_3702|tc|NP281256|tc|NP503765 chr1:1918324-1918265 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein (AT1G06270) mRNA, complete cds [NM_100509] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) AAAGTGGTTGAGCGTCTGATTAACATCGGTGAATGGAAGCTTGCTTGTACTGTTAGACAA

Total number of rows: 21561

Table truncated, full table size 10389 Kbytes.




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