 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 22, 2008 |
| Title |
Agilent-019667 WEHI_Citrobacterrodentium_15k_V1.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Citrobacter rodentium |
| Manufacturer |
Agilent |
| Manufacture protocol |
In Situ synthesis
|
| |
|
| |
|
| Contributor(s) |
Wakefield MJ, Tauschek M, Frankel G |
| Citation(s) |
18765720 |
| Submission date |
Sep 21, 2008 |
| Last update date |
May 14, 2014 |
| Contact name |
Matthew J Wakefield |
| E-mail(s) |
[email protected]
|
| Organization name |
Walter and Eliza Hall Institute
|
| Department |
Bioinformatics
|
| Street address |
1G Royal Parade
|
| City |
Parkville |
| State/province |
VIC |
| ZIP/Postal code |
3050 |
| Country |
Australia |
| |
|
| Samples (40)
|
GSM322928, GSM322929, GSM322930, GSM322931, GSM322932, GSM322933
GSM322934, GSM322935, GSM1004601, GSM1004602, GSM1004603, GSM1004604, GSM1004605, GSM1004606, GSM1004607, GSM1004608, GSM1004609, GSM1004610, GSM1004611, GSM1004612, GSM1004613, GSM1004614, GSM1004615, GSM1004616, GSM1386751, GSM1386752, GSM1386753, GSM1386754, GSM1386755, GSM1386756, GSM1386757, GSM1386758, GSM1386759, GSM1386760, GSM1386761, GSM1386762, GSM1386763, GSM1386764, GSM1386765, GSM1386766
|
| Series (3) |
| GSE12876 |
Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA |
| GSE40906 |
Genome-wide Analysis of the Pho Regulon in a pstCA mutant of Citrobacter rodentium |
| GSE57689 |
Analysis of the evolutionary adaptation of an AraC-like global regulatory protein in the murine enteric pathogen Citrobacter rodentium |
|
| Data table header descriptions |
| ID |
|
| COL |
Column |
| ROW |
Row |
| NAME |
Feature Name |
| SPOT_ID |
Feature ID, controls |
| CONTROL_TYPE |
Control Type pos/neg/FALSE |
| ACCESSION_STRING |
Gene Identifiers (predicted) from http://www.sanger.ac.uk/Projects/C_rodentium/ |
| CHROMOSOMAL_LOCATION |
chromosomal location |
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
COL |
ROW |
NAME |
SPOT_ID |
CONTROL_TYPE |
ACCESSION_STRING |
CHROMOSOMAL_LOCATION |
SEQUENCE |
| 1 |
96 |
164 |
GE_BrightCorner |
CONTROL |
pos |
|
|
|
| 2 |
96 |
162 |
DarkCorner |
CONTROL |
pos |
|
|
|
| 3 |
96 |
160 |
DarkCorner |
CONTROL |
pos |
|
|
|
| 4 |
96 |
158 |
CUST_7053_PI378739050 |
Sanger predicted gene_systematic_id: ROD16991 |
FALSE |
gb|ROD16991|gb|ROD16991 |
unmapped |
GAGTGCATAAATTCAATTGATACGTGGGCGGATTTATCCTCCTTGCAGCCTGAAACTAAG |
| 5 |
96 |
156 |
CUST_11964_PI378739050 |
Sanger predicted gene_systematic_id: ROD37191 |
FALSE |
gb|ROD37191|gb|ROD37191 |
unmapped |
TTAAGTGAACCGGTATTTTTCCTTCCCCTTCGTCATATTCAATGAGTCTGGTCTGGATGG |
| 6 |
96 |
154 |
CUST_1493_PI378739050 |
Sanger predicted gene_systematic_id: ROD36061 |
FALSE |
gb|ROD36061|gb|ROD36061 |
unmapped |
CTTTTTGCATGTTGTCGAACATCGTGTGGTAGATGATTTTCCCCATCGACGATGTTTCG |
| 7 |
96 |
152 |
CUST_8491_PI378739050 |
Sanger predicted gene_systematic_id: ROD39381 |
FALSE |
gb|ROD39381|gb|ROD39381 |
unmapped |
CTTCATCAGACGTTTGAGCAAACGCAGCTGATCTTCGCTGTCGAGGATCTGGAAATC |
| 8 |
96 |
150 |
CUST_1768_PI378739050 |
Sanger predicted gene_systematic_id: ROD09791 |
FALSE |
gb|ROD09791|gb|ROD09791 |
unmapped |
CCCAGATCAACGAATGCACCGTAGTCAGTGAGGTTCTTAACGATACCTTTAACTTCCATG |
| 9 |
96 |
148 |
CUST_11648_PI378739050 |
Sanger predicted gene_systematic_id: ROD36591 |
FALSE |
gb|ROD36591|gb|ROD36591 |
unmapped |
ATTGTGTCTTCCTGAAAGTTCTTTAATTCCTCGTACCAGTTTTTCCCGTCTTCGGACCAT |
| 10 |
96 |
146 |
CUST_11664_PI378739050 |
Sanger predicted gene_systematic_id: ROD45251 |
FALSE |
gb|ROD45251|gb|ROD45251 |
unmapped |
GCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTC |
| 11 |
96 |
144 |
CUST_11348_PI378739050 |
Sanger predicted gene_systematic_id: ROD04911 |
FALSE |
gb|ROD04911|gb|ROD04911 |
unmapped |
CGGATTGATTTTTTCTTTGATGATCGCATCAACGAAGTTGCGGCTCATCAGGTCG |
| 12 |
96 |
142 |
CUST_10699_PI378739050 |
Sanger predicted gene_systematic_id: ROD04931 |
FALSE |
gb|ROD04931|gb|ROD04931 |
unmapped |
CTTCCTTAATTTCTTCGCGAATGATGTCGTTGCATAAATCGACGCATTCGTCGCAGATAT |
| 13 |
96 |
140 |
CUST_896_PI378739050 |
Sanger predicted gene_systematic_id: ROD18711 |
FALSE |
gb|ROD18711|gb|ROD18711 |
unmapped |
CTGAGGTTCATTTCGCCCCCAATACGCTCTACCAGATCCTGAAAAATGCCAATTTTCAG |
| 14 |
96 |
138 |
CUST_1346_PI378739050 |
Sanger predicted gene_systematic_id: ROD23191 |
FALSE |
gb|ROD23191|gb|ROD23191 |
unmapped |
GTTTTTCCAGTACGTTGAGCATCTCGGTGAGCAGTTGTTCAACGTGTTCGTCACTATAG |
| 15 |
96 |
136 |
CUST_4006_PI378739050 |
Sanger predicted gene_systematic_id: ROD48531 |
FALSE |
gb|ROD48531|gb|ROD48531 |
unmapped |
CAATACCGGTAACCGGTATTTTTAAATAGGCCATCAGCACAAAGCCGAGGAAAAACCAG |
| 16 |
96 |
134 |
CUST_9202_PI378739050 |
Sanger predicted gene_systematic_id: ROD48761 |
FALSE |
gb|ROD48761|gb|ROD48761 |
unmapped |
GACGGACGGAACATCACGATCAGATTTAACCAAAACCTTATCGCGTTCTTTTCCAATGAC |
| 17 |
96 |
132 |
CUST_10597_PI378739050 |
Sanger predicted gene_systematic_id: ROD41411 |
FALSE |
gb|ROD41411|gb|ROD41411 |
unmapped |
ACGTCAGGGTGCTGCATAATGGCAATGCTCTCACTATCCAGAATACTTTCGACAATATTA |
| 18 |
96 |
130 |
CUST_8888_PI378739050 |
Sanger predicted gene_systematic_id: ROD40081 |
FALSE |
gb|ROD40081|gb|ROD40081 |
unmapped |
TATACCAGGGATACTTTGTCGATAACGTTGGAGTCGGTCATTTCGTGGTAGAAGTCGTTA |
| 19 |
96 |
128 |
CUST_596_PI378739050 |
Sanger predicted gene_systematic_id: ROD42011 |
FALSE |
gb|ROD42011|gb|ROD42011 |
unmapped |
TAAAACGAAGGTTATTATTTTCAATAACCTCACGGCGATAGACGCCCATCCATACCACGT |
| 20 |
96 |
126 |
CUST_891_PI378739050 |
Sanger predicted gene_systematic_id: ROD07871 |
FALSE |
gb|ROD07871|gb|ROD07871 |
unmapped |
GAGCCTGTTGGTATAAAGTAATTCTATAAAAGCAGCGGAATGCGACGCATACCATGCAAT |
Total number of rows: 15744
Table truncated, full table size 2644 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
Less...
More...