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| Status |
Public on Dec 09, 2008 |
| Title |
Human Exon 1.0 ST Array [exon_ids based on HsEx10stv2_Hs_ENSE_probesetgroup.txt ] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site
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| Description |
Chip description file based on Ensembl v.46
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| Contributor(s) |
Richard H, Schulz MH, Sultan M, Haas SA, Nürnberger A, Schrinner S, Bazereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Yaspo M |
| Submission date |
Nov 05, 2008 |
| Last update date |
Dec 09, 2008 |
| Contact name |
Marc Sultan |
| E-mail(s) |
[email protected]
|
| Organization name |
Max Planck Institute for molecular genetics
|
| Street address |
Ihnestr. 73
|
| City |
Berlin |
| ZIP/Postal code |
14195 |
| Country |
Germany |
| |
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| Samples (2) |
GSM339716, GSM339717 |
| Series (1) |
| GSE13474 |
Exon array analysis of two human cell lines (HEK293T Ramos B cell) |
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| Relations |
| Alternative to |
GPL5188 |
| Data table header descriptions |
| ID |
|
| Chr |
chromosome number |
| Strand |
strand orientation |
| GenomicStart |
genomic start coordinate of the exon |
| GenomicEnd |
genomic end coordinate of the exon |
| ProbeCoordinates |
(x,y) coordinates of the corresponding probes on the array |
| SPOT_ID |
corresponding gene description |
| Data table |
| ID |
Chr |
Strand |
GenomicStart |
GenomicEnd |
ProbeCoordinates |
SPOT_ID |
| ENSE00000328881_at |
4 |
+ |
1707275 |
1707324 |
(1173,2198)(417,594)(922,1367)(912,1708) |
Exon 8 of ENSG00000013810 (Transforming acidic coiled-coil-containing protein 3 (ERIC-1). [Source:Uniprot/SWISSPROT;Acc:Q9Y6A5]) |
| ENSE00000328922_at |
3 |
- |
132220203 |
132220040 |
(1123,1570)(895,1025)(299,281)(82,962)(708,2340)(279,2255)(1065,100)(726,1277) |
Exon 4 of ENSG00000034533 (asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]) |
| ENSE00000330196_at |
16 |
- |
45559529 |
45559497 |
(2467,1165)(2421,401)(1438,2416)(1283,2526) |
Exon 4 of ENSG00000069345 (DnaJ homolog subfamily A member 2 (HIRA-interacting protein 4) (Cell cycle progression restoration gene 3 protein) (Dnj3) (Renal carcinoma antigen NY-REN-14). [Source:Uniprot/SWISSPROT;Acc:O60884]) |
| ENSE00000330288_at |
3 |
- |
15588253 |
15588179 |
(1221,658)(1012,575)(653,47)(715,417)(496,2556)(481,977)(31,1508)(946,1736) |
Exon 12 of ENSG00000131373 (2-hydroxyacyl-CoA lyase 1 (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL). [Source:Uniprot/SWISSPROT;Acc:Q9UJ83]) |
| ENSE00000330290_at |
3 |
- |
15584489 |
15584423 |
(474,562)(1200,1252)(1035,1073)(902,397) |
Exon 14,16 of ENSG00000131373 (2-hydroxyacyl-CoA lyase 1 (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL). [Source:Uniprot/SWISSPROT;Acc:Q9UJ83]) |
| ENSE00000330324_at |
3 |
- |
16615021 |
16615019 |
(641,2428)(76,575)(206,1254) |
Exon 2 of ENSG00000092345 (Deleted in azoospermia-like (DAZ-like autosomal) (Deleted in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal). [Source:Uniprot/SWISSPROT;Acc:Q92904]) |
| ENSE00000330811_at |
22 |
- |
18340319 |
18340261 |
(2368,445)(2362,1076)(2368,677)(2222,452)(1640,1776)(1722,385)(1760,1945) |
Exon 14,16 of ENSG00000099889 (Armadillo repeat protein deleted in velo-cardio-facial syndrome. [Source:Uniprot/SWISSPROT;Acc:O00192]) |
| ENSE00000330846_at |
22 |
+ |
18330050 |
18330261 |
(1942,66)(2390,1199)(1825,602)(1790,880)(1449,916)(1509,2420)(1539,420)(1500,1580)(2062,2340)(2160,1942)(1873,488)(2106,1231)(2183,1391)(1976,886)(1718,1995)(1407,1715) |
Exon 3 of ENSG00000093010 (Catechol O-methyltransferase (EC 2.1.1.6). [Source:Uniprot/SWISSPROT;Acc:P21964]) |
| ENSE00000330860_at |
22 |
- |
16009426 |
16009380 |
(1813,1426)(1481,1784)(1890,1272)(1887,2524) |
Exon 3 of ENSG00000069998 (Cat eye syndrome critical region protein 5 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9BXW7]) |
| ENSE00000330966_at |
22 |
- |
18610550 |
18608947 |
(1462,1534)(1671,2410)(1469,357)(1374,2264)(1390,1011)(1524,2090)(1783,2198)(1352,1786)(1544,240)(1970,1974)(1955,292)(1712,1585)(1455,497)(1851,1267)(2401,1418)(1734,1906)(1939,524)(2192,1041)(1881,337)(2231,2536) |
Exon 2 of ENSG00000040608 (Reticulon-4 receptor precursor (Nogo receptor) (NgR) (Nogo-66 receptor). [Source:Uniprot/SWISSPROT;Acc:Q9BZR6]) |
| ENSE00000331106_at |
22 |
- |
17516573 |
17516521 |
(2418,142)(1755,588)(2231,2320)(2367,1700) |
Exon 3 of ENSG00000063515 (Homeobox protein goosecoid-like (GSC-2). [Source:Uniprot/SWISSPROT;Acc:O15499]) |
| ENSE00000331191_at |
22 |
+ |
17872914 |
17872971 |
(1867,1463)(2402,1662)(1825,1210)(2085,1208) |
Exon 10 of ENSG00000093009 (CDC45-related protein (PORC-PI-1) (Cdc45). [Source:Uniprot/SWISSPROT;Acc:O75419]) |
| ENSE00000331307_at |
1 |
- |
239870211 |
239869870 |
(186,554)(999,1318)(1149,1247)(370,1246)(1178,2123)(566,1518)(81,756)(614,913)(1023,2366) |
Exon 1 of ENSG00000054277 (Opsin-3 (Encephalopsin) (Panopsin). [Source:Uniprot/SWISSPROT;Acc:Q9H1Y3]) |
| ENSE00000331542_at |
11 |
- |
3070809 |
3070673 |
(1599,490)(1628,344)(1729,1403)(1954,1564) |
Exon 16,17,18 of ENSG00000021762 (Oxysterol-binding protein-related protein 5 (OSBP-related protein 5) (ORP-5). [Source:Uniprot/SWISSPROT;Acc:Q9H0X9]) |
| ENSE00000331592_at |
11 |
- |
3647711 |
3647606 |
(1709,2286)(1912,2450)(1339,1254)(1394,35) |
Exon 2 of ENSG00000129749 (Neuronal acetylcholine receptor subunit alpha-10 precursor (Nicotinic acetylcholine receptor subunit alpha 10) (NACHR alpha 10). [Source:Uniprot/SWISSPROT;Acc:Q9GZZ6]) |
| ENSE00000331689_at |
11 |
- |
2392782 |
2392715 |
(2392,546)(2530,961)(1534,1684)(1787,1553) |
Exon 10 of ENSG00000070985 (transient receptor potential cation channel, subfamily M, member 5 [Source:RefSeq_peptide;Acc:NP_055370]) |
| ENSE00000331693_at |
11 |
- |
2390749 |
2390576 |
(1455,2415)(1551,2302)(2193,2107)(2317,1247) |
Exon 15 of ENSG00000070985 (transient receptor potential cation channel, subfamily M, member 5 [Source:RefSeq_peptide;Acc:NP_055370]) |
| ENSE00000331695_at |
11 |
- |
2389536 |
2389449 |
(1756,2106)(1829,1898)(1320,146)(2062,297) |
Exon 17 of ENSG00000070985 (transient receptor potential cation channel, subfamily M, member 5 [Source:RefSeq_peptide;Acc:NP_055370]) |
| ENSE00000331854_at |
11 |
- |
14453974 |
14453914 |
(2444,884)(1608,604)(1643,546)(2526,931) |
Exon 13 of ENSG00000129083 (Coatomer subunit beta (Beta-coat protein) (Beta-COP). [Source:Uniprot/SWISSPROT;Acc:P53618]) |
| ENSE00000331855_at |
11 |
- |
14452713 |
14452637 |
(2309,1966)(2078,688)(1690,470)(1479,2328) |
Exon 14 of ENSG00000129083 (Coatomer subunit beta (Beta-coat protein) (Beta-COP). [Source:Uniprot/SWISSPROT;Acc:P53618]) |
Total number of rows: 178028
Table truncated, full table size 43578 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL7557_HsEx10stv2_Hs_ENSE.zip.gz |
92.2 Mb |
(ftp)(http) |
ZIP |
| GPL7557_acc.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
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