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Platform GPL7884 Query DataSets for GPL7884
Status Public on Jan 23, 2009
Title ExonHit Human Genome Wide SpliceArray 1.0
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer ExonHit
Manufacture protocol The Hs GWSA 1.0 is manufactured on the Affymetrix 49-format GeneChip with 5 micron feature size. Please see Affymetrix website for additional manufacturing protocol information.
Support glass
 
Description The Human Genome Wide Splice Array 1.0 contains over six million oligonucleotides designed to monitor expression of 20,649 genes and interrogate evidenced and predicted alternative splicing events.
Alternative splicing events were identified by comparing the exon structure of a selected representative sequence from a gene to the putative exon structure of overlapping and related public sequences (including RefSeq, mRNA and EST databases from GenBank). Probes were designed to monitor the alternative isoforms indicated.
 
Web link http://www.exonhit.com/index.php?page=6
Citation(s) 15760843
Submission date Dec 22, 2008
Last update date Jan 23, 2009
Contact name Michael Ian Brenner
E-mail(s) [email protected]
URL http://www.exonhit.com
Organization name ExonHit Therapeutics
Street address 217 Perry Parkway bld 5
City Gaithersburg
State/province MD
ZIP/Postal code 20872
Country USA
 
Samples (64) GSM431600, GSM431946, GSM432035, GSM432036, GSM432037, GSM432038 
Series (4)
GSE17258 Human Genome-Wide SpliceArrray - MAQC samples A, B, C, D
GSE22149 SRp20 regulates Genome-wide Alternative RNA splicing events in U2OS cells
GSE23677 Genome-wide analysis of novel splice variants induced by topoisomerase I poisoning shows preferential occurrence in genes encoding splicing factors

Data table header descriptions
ID
GENE_ID Entrez Gene ID
GENE_SYMBOL Entrez Gene Official Symbol
GENE_REPRESENTATIVE_GB_ACC Representative Sequence Accession (GenBank) used during analysis to represent the Gene
GENE_REPRESENTATIVE_GI Representative Sequence GI (GenBank) used during analysis to represent the Gene
SPLICE_EVENT_ID ExonHit SpliceEvent or Structural identifier
PROBESET_TARGET_GB_ACC Selected Sequence Accession (GenBank) probeset targets
PROBESET_TARGET_GI Selected Sequece GI (GenBank) probeset targets
SPOT_ID Role probeset involved in to monitor expression

Data table
ID GENE_ID GENE_SYMBOL GENE_REPRESENTATIVE_GB_ACC GENE_REPRESENTATIVE_GI SPLICE_EVENT_ID PROBESET_TARGET_GB_ACC PROBESET_TARGET_GI SPOT_ID
1.000.1-X_at 1 A1BG NM_130786.2 21071029 1.000.1 NM_130786.2 21071029 NM_130786
1.000.1-Y_at 1 A1BG NM_130786.2 21071029 1.000.1 NM_130786 structural (exon/intron) probeset
1.000.1-Z_at 1 A1BG NM_130786.2 21071029 1.000.1 NM_130786 structural (exon/intron) probeset
1.000.2-X_at 1 A1BG NM_130786.2 21071029 1.000.2 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.2-Y_at 1 A1BG NM_130786.2 21071029 1.000.2 NM_130786 structural (exon/intron) probeset
1.000.2-Z_at 1 A1BG NM_130786.2 21071029 1.000.2 NM_130786 structural (exon/intron) probeset
1.000.3-X_at 1 A1BG NM_130786.2 21071029 1.000.3 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.3-Y_at 1 A1BG NM_130786.2 21071029 1.000.3 NM_130786 structural (exon/intron) probeset
1.000.3-Z_at 1 A1BG NM_130786.2 21071029 1.000.3 NM_130786 structural (exon/intron) probeset
1.000.4-X_at 1 A1BG NM_130786.2 21071029 1.000.4 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.4-Y_at 1 A1BG NM_130786.2 21071029 1.000.4 NM_130786 structural (exon/intron) probeset
1.000.4-Z_at 1 A1BG NM_130786.2 21071029 1.000.4 NM_130786 structural (exon/intron) probeset
1.000.5-X_at 1 A1BG NM_130786.2 21071029 1.000.5 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.5-Y_at 1 A1BG NM_130786.2 21071029 1.000.5 NM_130786 structural (exon/intron) probeset
1.000.5-Z_at 1 A1BG NM_130786.2 21071029 1.000.5 NM_130786 structural (exon/intron) probeset
1.000.6-X_at 1 A1BG NM_130786.2 21071029 1.000.6 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.6-Y_at 1 A1BG NM_130786.2 21071029 1.000.6 NM_130786 structural (exon/intron) probeset
1.000.6-Z_at 1 A1BG NM_130786.2 21071029 1.000.6 NM_130786 structural (exon/intron) probeset
1.000.7-X_at 1 A1BG NM_130786.2 21071029 1.000.7 NM_130786.2 21071029 NM_130786 structural (exon junction) probeset
1.000.7-Y_at 1 A1BG NM_130786.2 21071029 1.000.7 NM_130786 structural (exon/intron) probeset

Total number of rows: 2108940

Table truncated, full table size 247600 Kbytes.




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