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Status
Public on Aug 30, 2009
Title
Montastraea faveolata 1.3 K
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Orbicella faveolata Manufacturer
UC Merced
Manufacture protocol
Microarrays consist of PCR-amplified cDNAs from M. faveolata. 1,314 PCR-amplified cDNAs were spotted in duplicate on poly-lysine-coated slides yielding a microarray with 2,628 total features. cDNAs were chosen from EST libraries described in (Schwarz et al., 2008). To annotate the cDNAs, we performed a BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr).
Support
glass
Coating
polysine
Web link
http://sequoia.ucmerced.edu/MedinaLab/index.php Contributor(s)
Schnetzer J , Voolstra CR , Peshkin L , Randall CJ , Szmant AM , Medina M Submission date
Mar 03, 2009
Last update date
Aug 30, 2009
Contact name
Christian Robert Voolstra
E-mail(s)
[email protected] URL
http://faculty.kaust.edu.sa/sites/christianvoolstra/Pages/home.aspx Organization name
King Abdullah University of Science and Technology
Street address
Red Sea Research Center
City
Thuwal
ZIP/Postal code
23955
Country
Saudi Arabia
Samples (18)
GSM377411 , GSM377413 , GSM377414 , GSM377416 , GSM377417 , GSM377419
GSM377420 ,
GSM377421 ,
GSM377422 ,
GSM377423 ,
GSM377424 ,
GSM377425 ,
GSM377426 ,
GSM377427 ,
GSM377440 ,
GSM377441 ,
GSM377442 ,
GSM377443 Series (1)
GSE15088 Effects of temperature on gene expression in coral larvae of Montastraea faveolata
Data table header descriptions ID Annot annotation based on blastx
CLONE_ID SPOT_ID
Data table ID Annot CLONE_ID SPOT_ID AOKF388
--unknown
AOSB1002
atp-dependent rna protein id:
AOSB1002 AOSB1012
serine arginine repetitive matrix 1
AOSB1012 AOSB1020
saps3 protein
AOSB1020 AOSB1028
ubiquitin-conjugating enzyme e2s
AOSB1028 AOSB1050
mitochondrial transcription factor b1 cg7319-isoform c
AOSB1050 AOSB1061
zinc finger protein 403
AOSB1061 AOSB1072
AOSB1072 AOSB1073
smooth muscle
AOSB1073 AOSB1074
cis-golgi matrix protein gm130
AOSB1074 AOSB1075
adaptor protein complex ap-alpha 2 subunit
AOSB1075 AOSB1088
microtubule-actin crosslinking factor 1
AOSB1088 AOSB1100
prp3 pre-mrna processing factor 3 homolog
AOSB1100 AOSB1111
adenosinerna-specific isoform b
AOSB1111 AOSB1115
truncated clumping factor
AOSB1115 AOSB1116
large homolog 7
AOSB1116 AOSB1124
hypothetical protein CHGG_05731
AOSB1124 AOSB1137
PREDICTED: hypothetical protein, partial
AOSB1137 AOSB1138
chromodomain helicase dna binding protein 1
AOSB1138 AOSB392
apex nuclease (multifunctional dna repair enzyme) 1
AOSB392
1218 35 Kbytes .Supplementary data files not provided
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