NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8355 Query DataSets for GPL8355
Status Public on Mar 27, 2009
Title Agilent-012700 Human Genome CGH Microarray 44A G4410A_beta (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Represents a beta-/trial version of Agilent-012750 Human Genome CGH Microarray 44A G4410A (GEO accession number GPL2873).

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 27, 2009
Last update date Jan 18, 2013
Contact name Henrik Edgren
E-mail(s) [email protected]
Organization name Institute for Molecular Medicine, University of Helsinki
Street address Tukholmankatu 8
City Helsinki
ZIP/Postal code 00290
Country Finland
 
Samples (11) GSM388211, GSM388212, GSM388213, GSM388214, GSM388215, GSM388216 
Series (3)
GSE15477 Data integration from two microarray platforms identifies genetic inactivation of RIC8A in a breast cancer cell line
GSE45476 Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma [aCGH_44k]
GSE45480 Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 1 1 BrightCorner pos
2 3 1 NegativeControl_(-)3xSLv1 neg
3 5 1 A_14_P122148 FALSE NM_014932.2 NLGN1 neuroligin 1 ref|NM_014932.2|gb|BX537831 chr3:175321901-175321960 Homo sapiens neuroligin 1 (NLGN1), mRNA [NM_014932]
4 7 1 A_14_P113625 FALSE chr14:036477530-036477589 Unknown
5 9 1 A_14_P103559 FALSE NM_000348.2 SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 ref|NM_000348.2|gb|M74047 chr2:031761308-031761367 Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) (SRD5A2), mRNA [NM_000348]
6 11 1 A_14_P129762 FALSE NM_018092.3 NETO2 neuropilin ref|NM_018092.3|gb|AK027630 chr16:046905798-046905857 Homo sapiens neuropilin (NRP) and tolloid (TLL)-like 2 (NETO2), mRNA [NM_018092]
7 13 1 Pro25G pos
8 15 1 A_14_P123995 FALSE NM_173825.1 RABL3 RAB, member of RAS oncogene family-like 3 ref|NM_173825.1|gb|BC020832 chr3:121741474-121741533 Homo sapiens RAB, member of RAS oncogene family-like 3 (RABL3), mRNA [NM_173825]
9 17 1 A_14_P137812 FALSE NM_152683.1 FLJ33167 hypothetical protein FLJ33167 ref|NM_152683.1|gb|AK057729 chr4:186308536-186308595 Homo sapiens hypothetical protein FLJ33167 (FLJ33167), mRNA [NM_152683]
10 19 1 A_14_P121658 FALSE NM_145055.1 MGC12909 hypothetical protein MGC12909 ref|NM_145055.1|gb|BC016149 chr18:042065837-042065896 Homo sapiens hypothetical protein MGC12909 (MGC12909), mRNA [NM_145055]
11 21 1 (+)E1A_r60_a20 pos
12 23 1 A_14_P122919 FALSE NM_018473.2 THEM2 thioesterase superfamily member 2 ref|NM_018473.2|gb|AK000508 chr6:024806112-024806169 Homo sapiens thioesterase superfamily member 2 (THEM2), mRNA [NM_018473]
13 25 1 A_14_P130374 FALSE NM_013377.2 DKFZp434B0417 similar to semaF cytoplasmic domain associated protein 3 ref|NM_013377.2|gb|AL133067 chr12:040254224-040254283 Homo sapiens similar to semaF cytoplasmic domain associated protein 3 (DKFZp434B0417), mRNA [NM_013377]
14 27 1 Pro25G pos
15 29 1 A_14_P124952 FALSE NM_014786.2 ARHGEF17 Rho guanine nucleotide exchange factor ref|NM_014786.2|gb|AB002335 chr11:072806354-072806413 Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17), mRNA [NM_014786]
16 31 1 A_14_P118299 FALSE NM_145246.2 C10orf4 chromosome 10 open reading frame 4 ref|NM_145246.2|gb|AF305826 chr10:095109613-095109672 Homo sapiens chromosome 10 open reading frame 4 (C10orf4), transcript variant 1, mRNA [NM_145246]
17 33 1 A_14_P123605 FALSE BC033450 gb|BC033450|ens|ENST00000314630 chr6:158872056-158872115 Homo sapiens KIAA1423, mRNA (cDNA clone IMAGE:3874410), partial cds. [BC033450]
18 35 1 A_14_P135559 FALSE NM_080862.1 SSB4 SPRY domain-containing SOCS box protein SSB-4 ref|NM_080862.1|gb|BC008324 chr3:142188293-142188352 Homo sapiens SPRY domain-containing SOCS box protein SSB-4 (SSB4), mRNA [NM_080862]
19 37 1 A_14_P126689 FALSE NM_133267.1 GSH-2 homeobox protein GSH-2 ref|NM_133267.1|gb|AB028838 chr4:054882835-054882885 Homo sapiens homeobox protein GSH-2 (GSH-2), mRNA [NM_133267]
20 39 1 A_14_P102536 FALSE NM_016588.2 NRN1 neuritin 1 ref|NM_016588.2|gb|BC042019 chr6:005943381-005943440 Homo sapiens neuritin 1 (NRN1), mRNA [NM_016588]

Total number of rows: 42603

Table truncated, full table size 7423 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap