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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 23, 2010 |
| Title |
Lewis-Sigler Institute Saccharomyces 13K [20070627MD_PMC] |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named 20070627MD_PMC
Printer: Arrayer 250A
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 16
Spot Rows per Sector: 16
Column Spacing: 235
Row Spacing: 240
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 240
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100700 SBSC_SONIC_1
100508 HYBRIDSB_9
100516 HYBRIDSC_4
100503 HYBRIDSB_4
100520 HYBRIDSC_8
100518 HYBRIDSC_6
100505 HYBRIDSB_6
100523 HYBRIDSC_11
100510 HYBRIDSB_11
100521 HYBRIDSC_9
100517 HYBRIDSC_5
100514 HYBRIDSC_2
100504 HYBRIDSB_5
100513 HYBRIDSC_1
100527 HYBRIDSC_15
100502 HYBRIDSB_3
100528 HYBRIDSC_16
100522 HYBRIDSC_10
100511 HYBRIDSB_12
100525 HYBRIDSC_13
100500 HYBRIDSB_1
100524 HYBRIDSC_12
100509 HYBRIDSB_10
100507 HYBRIDSB_8
100519 HYBRIDSC_7
100529 HYBRIDSC_17
100501 HYBRIDSB_2
100515 HYBRIDSC_3
100526 HYBRIDSC_14
100512 HYBRIDSB_13
100506 HYBRIDSB_7
100700 SBSC_SONIC_1
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| Description |
SBSC multi-organism print
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| Submission date |
Jun 05, 2009 |
| Last update date |
Jan 23, 2010 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
[email protected]
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
| |
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| Samples (64)
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GSM415611, GSM415612, GSM415613, GSM415614, GSM415615, GSM415616
GSM415617, GSM415618, GSM415619, GSM415620, GSM415621, GSM415692, GSM415693, GSM415694, GSM415695, GSM415696, GSM415697, GSM415698, GSM415699, GSM415700, GSM415701, GSM415702, GSM415703, GSM415704, GSM415705, GSM415706, GSM415707, GSM415708, GSM415709, GSM415710, GSM415711, GSM415712, GSM415713, GSM415714, GSM415715, GSM415716, GSM415717, GSM415718, GSM415719, GSM415720, GSM415721, GSM415722, GSM415723, GSM415724, GSM415725, GSM415726, GSM415727, GSM415728, GSM415729, GSM415730, GSM415731, GSM415732, GSM415733, GSM415734, GSM415735, GSM415736, GSM415737, GSM415738, GSM415739, GSM415740, GSM2330190, GSM2330193, GSM2495998, GSM2495999
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| Series (4)
|
| GSE16544 |
Systematic planning of genome-scale experiments in poorly studied species. |
| GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
| GSE87401 |
Differential paralog divergence modulates evolutionary outcomes in yeast |
| GSE95086 |
Loss of heterozygosity drives adaptation in hybrid yeast |
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| Data table header descriptions |
| ID |
feature/spot number |
| ORF |
S. cerevisiae locus tag |
| Sbayanus_ORF |
ORF name from S. bayanus joint assembly available at: http://downloads.yeastgenome.org/sequence/fungal_genomes/S_bayanus/WashU/ |
| ORGANISM |
the organism of the spotted sequence |
| SEQUENCE |
oligonucleotide sequence |
| SPOT_ID |
|
| Data table |
| ID |
ORF |
Sbayanus_ORF |
ORGANISM |
SEQUENCE |
SPOT_ID |
| 1 |
|
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--SBSC_SONIC_GENOMIC |
| 2 |
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|
--SBSC_SONIC_GENOMIC |
| 3 |
|
|
|
|
--SBSC_SONIC_GENOMIC |
| 4 |
|
|
|
|
--SBSC_SONIC_GENOMIC |
| 5 |
|
|
|
|
--SBSC_SONIC_GENOMIC |
| 6 |
|
|
|
|
--SBSC_SONIC_GENOMIC |
| 7 |
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--SBSC_SONIC_GENOMIC |
| 8 |
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|
--SBSC_SONIC_GENOMIC |
| 9 |
|
631.44 |
Saccharomyces bayanus |
TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC |
631.44 |
| 10 |
|
678.81 |
Saccharomyces bayanus |
ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT |
678.81 |
| 11 |
|
572.9 |
Saccharomyces bayanus |
CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA |
572.9 |
| 12 |
|
672.51 |
Saccharomyces bayanus |
GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA |
672.51 |
| 13 |
|
673.25 |
Saccharomyces bayanus |
ATTAGCCACATCTCCGTCAAAGAGGTTTTCTTCATTGTCTCTGACGCCTTATGGTAGGAAAATTTTAGGC |
673.25 |
| 14 |
|
667.74 |
Saccharomyces bayanus |
CTGACATGTTCAACGACAAAATAGAGGAGTGCGAAAAAAACGATATACCATTTGAAGATTGTATAATGGA |
667.74 |
| 15 |
|
468.3 |
Saccharomyces bayanus |
ACTATTGCTGAAACCCAAGGTAGTAAAGTCGTCATTGAAGGTGTTATTGACAATATTGTGAAGTTGTGTT |
468.3 |
| 16 |
|
662.36 |
Saccharomyces bayanus |
TCTTGCAAAGTTGTGTTGACGGGGGAGACCTACTAATAGACAAACAATTGAGTGGCATTTACTATTATAA |
662.36 |
| 17 |
YMR300C |
|
Saccharomyces cerevisiae |
AAATTAGCGGAAAATATTCTAAAGCAACTGAAGCCAGAAGATATTGATGTTGTTATTCCCGTCCCAGATA |
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| 18 |
YPL058C |
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Saccharomyces cerevisiae |
TAAGACTCCTCGTGTTAGAATTGACAAAATGACGAGAAAGCAATACGTTGATAACATCAGAGATATGTGG |
|
| 19 |
YGR234W |
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Saccharomyces cerevisiae |
TGAGTACTTGTTAAAAGCAATCAAGGAAGTTTTAGGCGATGCTGCGACTCCAGAGATAATTAATGCATGG |
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| 20 |
YOR257W |
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Saccharomyces cerevisiae |
GATGACGACCATACTGGGAAAATAAGTATTAAAAACTTGAGGCGTGTAGCTAAAGAATTAGGAGAAACTT |
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Total number of rows: 12288
Table truncated, full table size 1255 Kbytes.
| Supplementary data files not provided |
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