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Platform GPL8947 Query DataSets for GPL8947
Status Public on Jul 30, 2009
Title Bhabha Atomic Research Centre Deinococcus radiodurans 3166 array [condensed version]
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Deinococcus radiodurans
Manufacturer The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University
Manufacture protocol The oligonucleotides designed to represent the respective predicted ORFs of Deinococcus radiodurans ((NC_001263, NC_001264, NC_000958, NC_000959) are synthesized and purified by hydrophobic column on HPLC. The oligonucleotides are deposited on to poly-L-Lysine slide in duplicate. There are 32 blocks on the array. In each blocks there were 18 columns and 17 rows. Details can also be found in (Huan Chen, Guangzhi Xu, Ye Zhao, Bing Tian, Huiming Lu, Xiaoming Yu, Songnian Hu, Yuejin Hua*, A Novel OxyR Sensor and Regulator of Hydrogen Peroxide Stress with One Cysteine Residue in Deinococcus radiodurans, PLoS One, 2008, 3 (2): e1602.)
Support glass
Coating polysine
 
Description Oligonucleotides microarray corresponding to all the ORFs of Deinococcus radiodurans (NC_001263, NC_001264, NC_000958, NC_000959)
 
Contributor(s) Rajpurohit YS, Wang L, Yin L, Hua Y, Misra HS
Submission date Jul 29, 2009
Last update date Aug 09, 2009
Contact name Hari S Misra
E-mail(s) [email protected]
Phone 91-22-25595417
Fax 91-22-25505151
Organization name Bhabha Atomic Research Centre
Department Molecular Biology Division
Lab Molecular Genetics
Street address 2-46 S, Moldular Laboratories, Central Avenue, Bhabha Atomic Research Centre
City Mumbai
State/province MS
ZIP/Postal code 400085
Country India
 
Samples (6) GSM442435, GSM442437, GSM442538, GSM442540, GSM442567, GSM442568
Series (3)
GSE17720 Microarray studies of drb0090 mutant vs wild type
GSE17722 Microarray studies of dr2518 knockout mutant vs wild type
GSE17724 Microarray studies of pqqE disruption mutant vs wild type

Data table header descriptions
ID
ORF
DESCRIPTION
SPOT_ID

Data table
ID ORF DESCRIPTION SPOT_ID
DR0001 DR_0001 DNA polymerase III, beta subunit (dnaN)
DR0002 DR_0002 chromosomal replication initiator protein (dnaA)
DR0003 DR_0003 hypothetical protein
DR0004 DR_0004 MutT-nudix family protein
DR0005 DR_0005 conserved hypothetical protein
DR0006 DR_0006 conserved hypothetical protein
DR0007 DR_0007 conserved hypothetical protein
DR0008 DR_0008 hypothetical protein
DR0009 DR_0009 conserved hypothetical protein
DR0011 DR_0011 conserved hypothetical protein
DR0012 DR_0012 chromosome partitioning protein (spo0J)
DR0013 DR_0013 chromosome partitioning ATPase Soj
DR0014 DR_0014 gidB protein (gidB)
DR0015 DR_0015 hypothetical protein
DR0016 DR_0016 conserved hypothetical protein
DR0017 DR_0017 conserved hypothetical protein
DR0018 DR_0018 hypothetical protein
DR0019 DR_0019 hypothetical protein
DR0020 DR_0020 ribonuclease II family protein
DR0021 DR_0021 hypothetical protein

Total number of rows: 3166

Table truncated, full table size 147 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8947_gal.txt.gz 58.0 Kb (ftp)(http) TXT

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