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Status
Public on Aug 27, 2009
Title
SWEGENE_BAC_38K
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
SCIBLU - Swegene Centre for Integrative Biology at Lund University
Manufacture protocol
Arrays were produced by SCIBLU - Swegene Centre for Integrative Biology at Lund University - at Lund University by using amplified genomic DNA targets from BAC clones. Target amplification was performed using degenerate oligonucleotide primed PCR and products were purified by size-exclusion filtration and verified by agarose gel electrophoresis. After purification, products were dried down, recovered in 50% DMSO to a concentration of 500-1000ng/µl, and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics) equipped with MicroSpot2500 pins (BioRobotics).
Support
glass
Coating
aminosilane
Web link
http://www.lth.se/sciblu Contributor(s)
Borg A Submission date
Aug 21, 2009
Last update date
Aug 27, 2009
Contact name
Johan Staaf
Organization name
SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address
Medicon Village
City
Lund
ZIP/Postal code
SE-223 81
Country
Sweden
Samples (272)
GSM514572 , GSM514573 , GSM514574 , GSM514575 , GSM514576 , GSM514577
GSM514578 ,
GSM514579 ,
GSM514580 ,
GSM514581 ,
GSM514582 ,
GSM514583 ,
GSM514584 ,
GSM514585 ,
GSM514586 ,
GSM514587 ,
GSM514588 ,
GSM514589 ,
GSM514590 ,
GSM514591 ,
GSM514592 ,
GSM514593 ,
GSM514594 ,
GSM514595 ,
GSM514596 ,
GSM514597 ,
GSM514598 ,
GSM514599 ,
GSM514600 ,
GSM514601 ,
GSM514602 ,
GSM514603 ,
GSM514604 ,
GSM514605 ,
GSM514606 ,
GSM514607 ,
GSM514608 ,
GSM514609 ,
GSM514610 ,
GSM514611 ,
GSM514612 ,
GSM514613 ,
GSM514614 ,
GSM514615 ,
GSM514616 ,
GSM514617 ,
GSM514618 ,
GSM514619 ,
GSM514620 ,
GSM514621 ,
GSM514622 ,
GSM514623 ,
GSM514624 ,
GSM514625 ,
GSM514626 ,
GSM514627 ,
GSM514628 ,
GSM514629 ,
GSM514630 ,
GSM514631 ,
GSM514632 ,
GSM514633 ,
GSM514634 ,
GSM514635 ,
GSM514636 ,
GSM514637 ,
GSM514638 ,
GSM514639 ,
GSM514640 ,
GSM514641 ,
GSM514642 ,
GSM514643 ,
GSM514644 ,
GSM514645 ,
GSM514646 ,
GSM514647 ,
GSM514648 ,
GSM514649 ,
GSM514650 ,
GSM514651 ,
GSM514652 ,
GSM514653 ,
GSM514654 ,
GSM514655 ,
GSM514656 ,
GSM514657 ,
GSM514658 ,
GSM514659 ,
GSM514660 ,
GSM514661 ,
GSM514662 ,
GSM514663 ,
GSM514664 ,
GSM514665 ,
GSM514666 ,
GSM514667 ,
GSM514668 ,
GSM531549 ,
GSM531550 ,
GSM531551 ,
GSM531552 ,
GSM531553 ,
GSM531554 ,
GSM531555 ,
GSM531556 ,
GSM531557 ,
GSM531558 ,
GSM531559 ,
GSM531560 ,
GSM531561 ,
GSM531562 ,
GSM531563 ,
GSM531564 ,
GSM531565 ,
GSM531566 ,
GSM531567 ,
GSM531568 ,
GSM531569 ,
GSM531570 ,
GSM531571 ,
GSM531572 ,
GSM531573 ,
GSM531574 ,
GSM531575 ,
GSM929231 ,
GSM929232 ,
GSM929233 ,
GSM929234 ,
GSM929235 ,
GSM929236 ,
GSM929237 ,
GSM929238 ,
GSM929239 ,
GSM929240 ,
GSM929241 ,
GSM929242 ,
GSM929243 ,
GSM929244 ,
GSM929245 ,
GSM929246 ,
GSM929247 ,
GSM929248 ,
GSM929249 ,
GSM929250 ,
GSM929251 ,
GSM2561060 ,
GSM2561061 ,
GSM2561062 ,
GSM2561063 ,
GSM2561064 ,
GSM2561065 ,
GSM2561066 ,
GSM2561067 ,
GSM2561068 ,
GSM2561069 ,
GSM2561070 ,
GSM2561071 ,
GSM2561072 ,
GSM2561073 ,
GSM2561074 ,
GSM2561075 ,
GSM2561076 ,
GSM2561077 ,
GSM2561078 ,
GSM2561079 ,
GSM2561080 ,
GSM2561081 ,
GSM2561082 ,
GSM2561083 ,
GSM2561084 ,
GSM2561085 ,
GSM2561086 ,
GSM2561087 ,
GSM2561088 ,
GSM2561089 ,
GSM2561090 ,
GSM2561091 ,
GSM2561092 ,
GSM2561093 ,
GSM2561094 ,
GSM2561095 ,
GSM2561096 ,
GSM2561097 ,
GSM2561098 ,
GSM2561099 ,
GSM2561100 ,
GSM2561101 ,
GSM2561102 ,
GSM2561103 ,
GSM2561104 ,
GSM2561105 ,
GSM2561106 ,
GSM2561107 ,
GSM2561108 ,
GSM2561109 ,
GSM2561110 ,
GSM2561111 ,
GSM2561112 ,
GSM2918315 ,
GSM2918316 ,
GSM2918317 ,
GSM2918318 ,
GSM2918319 ,
GSM2918320 ,
GSM2918321 ,
GSM2918322 ,
GSM2918323 ,
GSM2918324 ,
GSM2918325 ,
GSM2918326 ,
GSM2918327 ,
GSM2918328 ,
GSM2918329 ,
GSM2918330 ,
GSM2918331 ,
GSM2918332 ,
GSM2918333 ,
GSM2918334 ,
GSM2918335 ,
GSM2918336 ,
GSM2918337 ,
GSM2918338 ,
GSM2918339 ,
GSM2918340 ,
GSM2918341 ,
GSM2918342 ,
GSM2918343 ,
GSM2918344 ,
GSM2918345 ,
GSM2918346 ,
GSM2918347 ,
GSM2918348 ,
GSM2918349 ,
GSM2918350 ,
GSM2918351 ,
GSM2918352 ,
GSM2918353 ,
GSM2918354 ,
GSM2918355 ,
GSM2918356 ,
GSM2918357 ,
GSM2918358 ,
GSM2918359 ,
GSM2918360 ,
GSM2918361 ,
GSM2918362 ,
GSM2918363 ,
GSM2918364 ,
GSM2918365 ,
GSM2918366 ,
GSM2918367 ,
GSM2918368 ,
GSM2918369 ,
GSM2918370 ,
GSM2918371 ,
GSM2918372 ,
GSM2918373 ,
GSM2918374 ,
GSM2918375 ,
GSM2918376 ,
GSM2918377 ,
GSM2918378 ,
GSM2918379 ,
GSM2918380 ,
GSM2918381 ,
GSM2918382 ,
GSM2918383 ,
GSM2918384 ,
GSM2918385 ,
GSM2918386 ,
GSM2918387 ,
GSM2918388 Series (8)
GSE20483 Clinical implications of gene dosage and gene expression patterns in diploid breast carcinoma (CGH)
GSE20486 Clinical implications of gene dosage and gene expression patterns in diploid breast carcinoma
GSE21259 High-resolution aCGH analyses of copy number alterations in HER2-amplified breast cancer
GSE36511 Genetic characterization of large parathyroid adenomas
GSE97292 Genome-wide multi-omics profiling reveals extensive genetic complexity in 8p11-p12 amplified breast carcinomas [aCGH]
GSE97293 Genome-wide multi-omics profiling reveals extensive genetic complexity in 8p11-p12 amplified breast carcinomas
GSE108984 Clonality analysis in breast tumour pairs using aCGH data
GSE108985 Clonal relatedness in tumour pairs of breast cancer patients
Data table header descriptions ID CLONE_ID Identifier ID for BAC clones
CHR Chromosome (1-24) assigned to BAC clone
START Start base within chromosome assigned to BAC clone
END End base within chromosome assigned to BAC clone
SPOT_ID Identifier for spots that do not contain BAC derived probes
ReporterID Reporter ID for spot, i.e., either CLONE_ID or SPOT_ID
41760 1938 Kbytes .Supplementary data files not provided
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