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Platform GPL9297 Query DataSets for GPL9297
Status Public on Sep 29, 2009
Title Cryptococcus neoformans H99 gene expression microarray version 1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Cryptococcus neoformans
Manufacturer Agilent Technologies
Manufacture protocol 1. Arrays were designed using Agilent eArray software
2. Custom gene expression arrays were generated by Agilent Technologies in their 8X15K format
 
Description Agilent custom expression array design #020071
 
Submission date Sep 25, 2009
Last update date Sep 30, 2009
Contact name Clara Bien
E-mail(s) [email protected]
Phone 443-287-5027
URL http://www.espenshadelab.com
Organization name Johns Hopkins University
Department Cell Biology
Lab Espenshade Lab
Street address 725 N. Wolfe St Physiology rm #107
City Baltimore
State/province MD
ZIP/Postal code 21210
Country USA
 
Samples (6) GSM456538, GSM456539, GSM456540, GSM456541, GSM456542, GSM456543
Series (1)
GSE18282 Role of Cryptococcus neoformans Sre1-pathway in low oxygen gene expression

Data table header descriptions
ID
ProbeName
GENE_ID GeneID number from C. neoformans H99 sequencing project at BROAD institute (http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiHome.html)
COMMON_NAME Common name
HOMOLOG_ID ID number for C. neoformans serotype D strain B3501A
DESCRIPTION Gene description
SEQUENCE
SPOT_ID

Data table
ID ProbeName GENE_ID COMMON_NAME HOMOLOG_ID DESCRIPTION SEQUENCE SPOT_ID
1 (+)E1A_r60_1 E1A_r60_1 (+)E1A_r60_1
2 (+)E1A_r60_3 E1A_r60_3 (+)E1A_r60_3
3 (+)E1A_r60_a104 E1A_r60_a104 (+)E1A_r60_a104
4 (+)E1A_r60_a107 E1A_r60_a107 (+)E1A_r60_a107
5 (+)E1A_r60_a135 E1A_r60_a135 (+)E1A_r60_a135
6 (+)E1A_r60_a20 E1A_r60_a20 (+)E1A_r60_a20
7 (+)E1A_r60_a22 E1A_r60_a22 (+)E1A_r60_a22
8 (+)E1A_r60_a97 E1A_r60_a97 (+)E1A_r60_a97
9 (+)E1A_r60_n11 E1A_r60_n11 (+)E1A_r60_n11
10 (+)E1A_r60_n9 E1A_r60_n9 (+)E1A_r60_n9
11 CUST_1_PI378736272 CNAG_06241 LAC3 CNAG_06241 LAC3 laccase [Auricularia polytricha] E(1e-141) TTCCACCCTTTCCATCTCCATGGCCACGTATTCCAAGTTGTCAGCAAATCATTCGACGTC
12 CUST_10_PI378736272 CNAG_06185 CNM1730 CNAG_06185 CNM1730 E(4e-22) CTCTCCGCCCCTCAAGATGACGGCGTCCTCCCTGAGGATGGTATAGACGAAGTCCTCAAC
13 CUST_100_PI378736272 COX11 COX11 S69052 cytochrome-c oxidase assembly protein COX11 - yeast (Saccharomyces cerevisiae) E(1e-55) AGGCTGCTCGGCAAAGGATGTACCAGGAGAGGGCAAACAAAAACAGAAGTATCCTGTTAT
14 CUST_1000_PI378736272 CNAG_05087 CNI1490 CNAG_05087 CNI1490 E(1e-122) GGTTGTGTATATCCCCTGTAATATCAAATATCGCCCATGACTGCCGGCCTAATGCCCAGA
15 CUST_1001_PI378736272 CNAG_05059 PDB102 CNAG_05059 PDB102 T50967 probable pyruvate dehydrogenase (lipoamide) beta chain precursor (PDB1) [imported] - Neurospora crassa E(1e-122) CGCCATCAGGGATTCCAACCCTGTCTGTTTCCTCGAGAACGAGCTTCTCTACGGTGTCCA
16 CUST_1002_PI378736272 TGTGCTGATGTGCTGATATTTAGGGCCCCAATCGGCGTAATCCTCTTTGTCGGGTCGATG
17 CUST_1003_PI378736272 CNAG_01498 CNC0370 CNAG_01498 CNC0370 T46577 arylsulfatase (EC 3.1.6.1) [validated] - Neurospora crassa E(1e-107) ACACTTACTACACCGGAAAGCTCATGAACGACCATACCGACGCTAATTGCGAGTCCTTGC
18 CUST_1004_PI378736272 CNAG_05088 FMP13 CNAG_05088 FMP13 potential mitochondrial protein Fmp13 [Candida albicans SC5314] E(6e-18) GCTGCGCACCGCCCACAGACGGGCCCCCCGCAGCCTCTGCGCCCAGCCCCAGCGAAGACT
19 CUST_1008_PI378736272 ZTA103 ZTA103 similar to Homo sapiens (Human). Quinone oxidoreductase homolog [Dictyostelium discoideum] E(1e-64) TCGATGATACTATGAAAGTCAAAGTTCATGAGGTGAACCCCTGGTCCAAGGTTACTGAGG
20 CUST_1009_PI378736272 CNAG_01499 YIL166C02-A CNAG_01499 YIL166C02-A E(1e-08) TCTATTTCCGACTTTGACATGTGGCCTCTCTACGTTATCGGTTTGATTGCCTTCATTGCC

Total number of rows: 12716

Table truncated, full table size 2254 Kbytes.




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