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Platform GPL9450 Query DataSets for GPL9450
Status Public on Jan 01, 2010
Title UCSF C. elegans 20K oligo array version 1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Caenorhabditis elegans
Manufacturer University of California, San Francisco
Manufacture protocol We used oligonucleotide sets for C. elegans. We printed these oligonucleotides at high density on polylysine-coated glass slides, closely adhering to protocols available at http://microarrays.org.
 
 
Submission date Oct 14, 2009
Last update date Jan 01, 2010
Contact name SEUNG-JAE LEE
E-mail(s) [email protected]
Phone 82-54-279-2351
Organization name POHANG UNIVERSITY OF SCIENCE AND TECHNOLOGY
Department LIFE SCEICNE
Lab MOLECULAR GENETICS OF AGING
Street address SAN 31 HYOJA-DONG, NAM-GU
City POHANG
State/province GYEONGBUK
ZIP/Postal code 790-784
Country South Korea
 
Samples (17) GSM461962, GSM461963, GSM461964, GSM461965, GSM461966, GSM461967 
Series (4)
GSE18561 Adult C. elegans: Control daf-2 mutants treated with daf-16 RNAi vs. daf-2 mutants treated with empty vector RNAi
GSE18562 Adult C. elegans: Control OP50 culture vs. OP50 + 2% glucose culture
GSE18563 Glucose Shortens the Lifespan of Caenorhabditis elegans by Down-Regulating Aquaporin Gene Expression

Data table header descriptions
ID
Block The location of the block (from top left to bottom right)
Row Row in the block
Column Column in the block
ORF Gene name
SEQUENCE
SPOT_ID
Description Gene description

Data table
ID Block Row Column ORF SEQUENCE SPOT_ID Description
1 1 1 1 EMPTY null
2 1 1 2 C25A1.8 TCGTTTATTATTTGTCACCGGGTTCCATCCCCCTTACGTTTGACAATCATTGCACTCACT contains similarity to Pfam domain PF00059 (Lectin C-type domain short and long forms)
3 1 1 3 F21F3.6 CTCCATCCCACACACACACACTTGTCCAAACCCAATGTATATTTCTCGGAATATCCCCGA contains similarity to Raja radiata NADH dehydrogenase subunit 6.; TR:Q9ZY34
4 1 1 4 F25H2.9 GGCGTCCAATCGGAGAATTCACAAGAGTGTCGAACGAAGAGCTCGATCAAGTTATCACAT C. elegans PAS-5 protein; contains similarity to Pfam domain PF00227 (Proteasome A-type and B-type)
5 1 1 5 F56H1.4 TTTCGTATTCTATTCCCACCCCTCTCCTGTTTTTATTGATTCATCCTCGAAGTGCGTGGA C. elegans RPT-5 protein; contains similarity to Pfam domain PF00004 (ATPases associated with various cellular activities (AAA))
6 1 1 6 H06O01.1 TTTGGTGCCTTCATTATGGCGTTTCGTACGCCTTTTTTGCCAATAAACCTTCTGGTCTCT C. elegans PDI-3 protein; contains similarity to Pfam domain PF00085 (Thioredoxins)
7 1 1 7 T20F10.2 TCGCCGAGCCAGATGCAGTTGATGGAGATGAGCAAGACGACAAGGAGACATAATTTAAAT contains similarity to Interpro domain IPR009056 (Cytochrome c)
8 1 1 8 T23H2.5 CCACAGAGGCAGAGTAGCAGTGGAGGATGCTGCTAGATTCATGTTTTTCCCTCTTACTTC C. elegans RAB-10 protein; contains similarity to Pfam domain PF00071 (Ras family (contains ATP/GTP binding P-loop))
9 1 1 9 Y65B4BR.6 GTTCCCGCCGTTGCCATTCCCCTGACAAAAAATATGGTCGGCATTTGTCTGTACAAATTG null
10 1 1 10 Y71F9B.8 CCTCTTTCCCGTCAAACTGGTACTTGCCATTCCACTGAAATGTTCCGATTGTTCAAACGA contains similarity to Pfam domain PF00560 (Leucine Rich Repeat)
11 1 1 11 C16A11.1 CACGAGAAGCCTCTGTACACGCATATAACCAATGCGACAGACACTCGGAATATTGATCGG C. elegans GPA-11 protein; contains similarity to Pfam domain PF00503 (G-protein alpha subunit)
12 1 1 12 C30B5.6 TCATTCCCTCTCTCTCTTGTTTCTCTCTGTCTCTCTTCCCTTCCCATTGATTCCTTTCTT contains similarity to Trypanosoma cruzi Mucin-like protein.; TR:Q26878
13 1 1 13 F33A8.2 TGTTTCCCCCTTCCACCAATTCCCCCCACGTCCTAATGAAATGAAAGCGAGAAGATAAAT C. elegans NLP-18 protein; contains similarity to Helicoverpa armigera Helicostatins precursor [Contains: Helicostatin I; Helicostatin IIa;sHelicostatin IIb; Helicostatin III; Helicostatin IV; Helicostatin V;sHelicostatin VI; Helicostatin VII; Helicostatin VIII; HelicostatinsIX].; SW:ALLP_HELAM
14 1 1 14 F37H8.5 GAGACAAGGCCATTCCATACTGTGAGGCTGCTCTCAAATTGAAGTACAAGAAGGCCAGTA contains similarity to Pfam domain PF03227 (Gamma interferon inducible lysosomal thiol reductase (GILT))
15 1 1 15 R07G3.1 ACTGTTTTCTCATCCACTACGTTTTGTGTCTCCCTCCTCCTTTCTCCAGAACAACTCTGT C. elegans CDC-42 protein; contains similarity to Pfam domain PF00071 (Ras family (contains ATP/GTP binding P-loop))
16 1 1 16 T01E8.4 CCCATCATCGAGAACTCTGGCAATTGGCAATGGTGATAGCTCAATTCTGTTCTGTCTTCC contains similarity to Pfam domains PF00646 (F-box domain), PF00400 (WD domain, G-beta repeats)(4)
17 1 1 17 Y48E1B.10 TCCCGGAGATTCGCAAGCATCTTGAATCGAGCCCGGATAAGGGATTCTAATCATTTTCTG C. elegans GST-20 protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferases.), PF02798 (Glutathione S-transferase, N-terminal domain)
18 1 1 18 Y54G9A.7 CAACCCCAGAAGAAGCCGAGCAGATCAAGGCGTTGAAGGAGAAATACGCGAAATTATATC contains similarity to Drosophila melanogaster Flybase gene name is CG11876-PB; FLYBASE:CG11876-PB
19 1 1 19 C16A3.4 GGCAGTCAAGTCGAACAAGTTGTTCAAGACAAACGGATTCGTCGGAGACAATCATTGACC contains similarity to Pfam domain PF00096 (Zinc finger, C2H2 type)
20 1 1 20 C28H8.12 AGCGATTATCGAGTATGAGTCCCAAGGAAAGCAAGAAATCGGGTCAGTGGTTGAAAAGCT C. elegans DNC-2 protein; contains similarity to Pfam domain PF04912 (Dynamitin)

Total number of rows: 23232

Table truncated, full table size 2916 Kbytes.




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