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Platform GPL9466 Query DataSets for GPL9466
Status Public on Oct 22, 2009
Title Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version]
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Deinococcus radiodurans
Manufacturer The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University
Manufacture protocol The oligonucleotides designed to represent the respective predicted ORFs of Deinococcus radiodurans ((NC_001263, NC_001264, NC_000958, NC_000959) are synthesized and purified by hydrophobic column on HPLC. The oligonucleotides are deposited on to poly-L-Lysine slide in duplicate. There are 32 blocks on the array. In each blocks there were 18 columns and 17 rows. Details can also be found in (Huan Chen, Guangzhi Xu, Ye Zhao, Bing Tian, Huiming Lu, Xiaoming Yu, Songnian Hu, Yuejin Hua*, A Novel OxyR Sensor and Regulator of Hydrogen Peroxide Stress with One Cysteine Residue in Deinococcus radiodurans, PLoS One, 2008, 3 (2): e1602.)
Support glass
Coating polysine
 
 
Contributor(s) Hua X, Wang H, Hua Y
Submission date Oct 20, 2009
Last update date Oct 22, 2009
Contact name Yuejin Hua
E-mail(s) [email protected]
Organization name Zhejiang University
Department Institute of Nuclear-Agricultural Sciences
Street address 268 KaiXuan Road
City Hangzhou
State/province Zhejiang
ZIP/Postal code 310029
Country China
 
Samples (6) GSM463624, GSM463625, GSM561031, GSM835124, GSM835125, GSM835126
Series (3)
GSE18661 Deinococcus radiodurans R1: rpob 9-bp-deletion vs. wild-type
GSE22628 Deinococcus radiodurans R1: wildtype strains vs. DR1790-deletion strains
GSE33758 Deinococcus radiodurans R1: wildtype strains vs. DR0199-deletion strains

Data table header descriptions
ID
ORF
DESCRIPTION
SPOT_ID
SEQUENCE probe sequence

Data table
ID ORF DESCRIPTION SPOT_ID SEQUENCE
DR0001 DR_0001 DNA polymerase III, beta subunit (dnaN) GCGCGTTTAAGGGGCCTTCTGAGGCCGTTACGGGGCATGTCTGCCCTGGCCCATCACCCGGA
DR0002 DR_0002 chromosomal replication initiator protein (dnaA) CAACAAGCAGATCATCCTCAGTTCGGACCGGCCCCCCAAGGACATCCAGACACTCGAAGGCCGCC
DR0003 DR_0003 hypothetical protein CGCCGCGTTCCTGACGTACCGACGCGCTGTCCTTGCCAAGGACGGTGCGGTTGCTGATGC
DR0004 DR_0004 MutT-nudix family protein CTCCTGAAACATGCGGGCACTGGGAACACAGTCACTGGGAAATGGACGCTTCCCGGCGGCAGCC
DR0005 DR_0005 conserved hypothetical protein TCGTCGGGCACTTTATTGCCGAGGGCGAAAGCGGCGAGGCACACGGTGTTCACACCCACAACCCG
DR0006 DR_0006 conserved hypothetical protein CCTCATGCTCAAGATCCGTTCTCTCGGCCACAGCACTTTCTTTCTCGATGACGGGACGCACCGTC
DR0007 DR_0007 conserved hypothetical protein TTGCCGGTGGGCGACCGAAGGAGCCTGCTGCCGTTGACGACCCTGTCCAGCCTGAACCTGC
DR0008 DR_0008 hypothetical protein CAGGGCAAGCGCAAACAGTGGCAGCGCTGGCTGAGCCCGCGGTACGTATGGCGGCGG
DR0009 DR_0009 conserved hypothetical protein TCCGGTGCCGCAACCCCCAATGCCACAACCGTCAGTCCCTCAAACCCCGGCTCCCCA
DR0011 DR_0011 conserved hypothetical protein TGGTATCTGGAAAACTACGATCTGGCGCAGGCATTGCAGACCGGAAGTGTCCTGGGAGCCGCCGG
DR0012 DR_0012 chromosome partitioning protein (spo0J) GTCGCGCAGGCAGGGACGGGAACACAGGTGCAGACCCTGAAAATCGAGCGCATCGCCCAGGC
DR0013 DR_0013 chromosome partitioning ATPase Soj GCAGGCGCCGCGCAGGTGTGCAGGAGGGGCCAGGAGTGACAGGAGAGGCATGAAAACCATCGG
DR0014 DR_0014 gidB protein (gidB) CCGCCGTGAGGGCGTGCCGACCCATCAGCCGCTCTTCTGGAAAGCGAAAGAACAGTCCCGTTGA
DR0015 DR_0015 hypothetical protein TCCAAGCTCTACGGCCCCTACACCCACGGCGGGCGCAGTTATTTTCAGTGGATGATGCGCGGGCA
DR0016 DR_0016 conserved hypothetical protein CCGCCGCTTTCTCCCAATGGCCAGCGGATGCGCCCCCACATCGTCTGGTTCGGGGAATACTTGCC
DR0017 DR_0017 conserved hypothetical protein GGGTTCTGGGCCTCTCGTACCCCACGGTGCGTTCGCGTTTCGATGCCCTGCTGCGAGCGATGG
DR0018 DR_0018 hypothetical protein GACGCCCCAGCCGGGACGAGGCCGCCCTGGAGGAAGAGAAGCCATGACTGACCGCACAGC
DR0019 DR_0019 hypothetical protein GGCGAGCACCAGTTGAAACTGCATGGGGGCAATGCCCGGCTAGCCCTCCGTCCGGACAGTTCGC
DR0020 DR_0020 ribonuclease II family protein CCTGCACGAGGTGTCTCCGGCGCTCTCCATCTGTCTCGACCTCGACCCGGACGGCAACGCC
DR0021 DR_0021 hypothetical protein ACTGCCGCGAGCCTTCCCTGCGACATCGTGTCCCTCCGCATGGCCCACTGCCGTG

Total number of rows: 3166

Table truncated, full table size 341 Kbytes.




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Supplementary data files not provided
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